Table 5
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AUPR Results of FGS with WkNNRI and traditional machine learning based competitors.

SettingDatasetMSCMFKRLSMKLMKTCMFNEDTPFGSWkNNRI
CVS|$_d$|NR0.44(4)0.474(3)0.415(5)0.486(2)0.551(1)
GPCR0.46(2)0.302(5)0.417(4)0.451(3)0.547(1)
IC0.408(2)0.236(5)0.337(4)0.407(3)0.486(1)
E0.231(4)0.208(5)0.256(3)0.33(2)0.418(1)
Luo0.371(4)0.452(3)0.485(2)0.077(5)0.49(1)
AveRank3.24.23.631
CVS|$_t$|NR0.466(4)0.497(2)0.49(3)0.375(5)0.565(1)
GPCR0.583(4)0.579(5)0.726(2)0.684(3)0.776(1)
IC0.781(4)0.744(5)0.849(2)0.8(3)0.855(1)
E0.574(4)0.464(5)0.708(2)0.615(3)0.725(1)
Luo0.08(4)0.21(3)0.248(2)0.046(5)0.459(1)
AveRank442.23.81
CVS|$_{dt}$|NR0.228(3)0.191(4)0.242(2)0.16(5)0.251(1)
GPCR0.284(3)0.239(5)0.248(4)0.29(2)0.389(1)
IC0.232(3)0.131(5)0.199(4)0.251(2)0.339(1)
E0.1(3)0.091(4)0.084(5)0.112(2)0.241(1)
Luo0.018(5)0.125(3)0.129(2)0.03(4)0.203(1)
AveRank3.44.23.431
Summary3.534.133.073.271
p-value3.2e-33.2e-33.2e-33.2e-3-
SettingDatasetMSCMFKRLSMKLMKTCMFNEDTPFGSWkNNRI
CVS|$_d$|NR0.44(4)0.474(3)0.415(5)0.486(2)0.551(1)
GPCR0.46(2)0.302(5)0.417(4)0.451(3)0.547(1)
IC0.408(2)0.236(5)0.337(4)0.407(3)0.486(1)
E0.231(4)0.208(5)0.256(3)0.33(2)0.418(1)
Luo0.371(4)0.452(3)0.485(2)0.077(5)0.49(1)
AveRank3.24.23.631
CVS|$_t$|NR0.466(4)0.497(2)0.49(3)0.375(5)0.565(1)
GPCR0.583(4)0.579(5)0.726(2)0.684(3)0.776(1)
IC0.781(4)0.744(5)0.849(2)0.8(3)0.855(1)
E0.574(4)0.464(5)0.708(2)0.615(3)0.725(1)
Luo0.08(4)0.21(3)0.248(2)0.046(5)0.459(1)
AveRank442.23.81
CVS|$_{dt}$|NR0.228(3)0.191(4)0.242(2)0.16(5)0.251(1)
GPCR0.284(3)0.239(5)0.248(4)0.29(2)0.389(1)
IC0.232(3)0.131(5)0.199(4)0.251(2)0.339(1)
E0.1(3)0.091(4)0.084(5)0.112(2)0.241(1)
Luo0.018(5)0.125(3)0.129(2)0.03(4)0.203(1)
AveRank3.44.23.431
Summary3.534.133.073.271
p-value3.2e-33.2e-33.2e-33.2e-3-
Table 5
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AUPR Results of FGS with WkNNRI and traditional machine learning based competitors.

SettingDatasetMSCMFKRLSMKLMKTCMFNEDTPFGSWkNNRI
CVS|$_d$|NR0.44(4)0.474(3)0.415(5)0.486(2)0.551(1)
GPCR0.46(2)0.302(5)0.417(4)0.451(3)0.547(1)
IC0.408(2)0.236(5)0.337(4)0.407(3)0.486(1)
E0.231(4)0.208(5)0.256(3)0.33(2)0.418(1)
Luo0.371(4)0.452(3)0.485(2)0.077(5)0.49(1)
AveRank3.24.23.631
CVS|$_t$|NR0.466(4)0.497(2)0.49(3)0.375(5)0.565(1)
GPCR0.583(4)0.579(5)0.726(2)0.684(3)0.776(1)
IC0.781(4)0.744(5)0.849(2)0.8(3)0.855(1)
E0.574(4)0.464(5)0.708(2)0.615(3)0.725(1)
Luo0.08(4)0.21(3)0.248(2)0.046(5)0.459(1)
AveRank442.23.81
CVS|$_{dt}$|NR0.228(3)0.191(4)0.242(2)0.16(5)0.251(1)
GPCR0.284(3)0.239(5)0.248(4)0.29(2)0.389(1)
IC0.232(3)0.131(5)0.199(4)0.251(2)0.339(1)
E0.1(3)0.091(4)0.084(5)0.112(2)0.241(1)
Luo0.018(5)0.125(3)0.129(2)0.03(4)0.203(1)
AveRank3.44.23.431
Summary3.534.133.073.271
p-value3.2e-33.2e-33.2e-33.2e-3-
SettingDatasetMSCMFKRLSMKLMKTCMFNEDTPFGSWkNNRI
CVS|$_d$|NR0.44(4)0.474(3)0.415(5)0.486(2)0.551(1)
GPCR0.46(2)0.302(5)0.417(4)0.451(3)0.547(1)
IC0.408(2)0.236(5)0.337(4)0.407(3)0.486(1)
E0.231(4)0.208(5)0.256(3)0.33(2)0.418(1)
Luo0.371(4)0.452(3)0.485(2)0.077(5)0.49(1)
AveRank3.24.23.631
CVS|$_t$|NR0.466(4)0.497(2)0.49(3)0.375(5)0.565(1)
GPCR0.583(4)0.579(5)0.726(2)0.684(3)0.776(1)
IC0.781(4)0.744(5)0.849(2)0.8(3)0.855(1)
E0.574(4)0.464(5)0.708(2)0.615(3)0.725(1)
Luo0.08(4)0.21(3)0.248(2)0.046(5)0.459(1)
AveRank442.23.81
CVS|$_{dt}$|NR0.228(3)0.191(4)0.242(2)0.16(5)0.251(1)
GPCR0.284(3)0.239(5)0.248(4)0.29(2)0.389(1)
IC0.232(3)0.131(5)0.199(4)0.251(2)0.339(1)
E0.1(3)0.091(4)0.084(5)0.112(2)0.241(1)
Luo0.018(5)0.125(3)0.129(2)0.03(4)0.203(1)
AveRank3.44.23.431
Summary3.534.133.073.271
p-value3.2e-33.2e-33.2e-33.2e-3-
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