The performance of SCSMDA under different embedding sizes on MDAD, aBiofilm and DrugVirus datasets.
Dataset . | Embedding size . | ACC . | AUC . | AUPRC . | MCC . | F1 . |
---|---|---|---|---|---|---|
MDAD | 16 | 0.8582|$\pm $| 0.0052 | 0.9478|${\pm }$|0.0031 | 0.9243|${\pm }$|0.0045 | 0.7329|${\pm }$|0.0121 | 0.8409|${\pm }$|0.0027 |
32 | 0.8659|${\pm }$|0.0036 | 0.9506|${\pm }$|0.0019 | 0.9364|${\pm }$|0.0044 | 0.7352|${\pm }$|0.0062 | 0.8485|${\pm }$|0.0027 | |
64 | 0.8701|${\pm }$|0.0045 | 0.9548|${\pm }$|0.0022 | 0.9409|${\pm }$|0.0027 | 0.7365|${\pm }$|0.0061 | 0.8504|${\pm }$|0.0036 | |
128 | 0.8791|${\pm }$|0.0054 | 0.9573|${\pm }$|0.0020 | 0.9464|${\pm }$|0.0033 | 0.7261|${\pm }$|0.0025 | 0.8528|${\pm }$|0.0008 | |
256 | 0.8651|${\pm }$|0.0030 | 0.9511|${\pm }$|0.0043 | 0.9389|${\pm }$|0.0068 | 0.7008|${\pm }$|0.0249 | 0.8477|${\pm }$|0.0181 | |
512 | 0.8304|${\pm }$|0.0131 | 0.9446|${\pm }$|0.0035 | 0.9330|${\pm }$|0.0044 | 0.7093|${\pm }$|0.0156 | 0.8491|${\pm }$|0.0095 | |
aBiofilm | 16 | 0.8824|${\pm }$|0.0013 | 0.9538|${\pm }$|0.0028 | 0.9491|${\pm }$|0.0082 | 0.7316|${\pm }$|0.0013 | 0.8627|${\pm }$|0.0081 |
32 | 0.8907|${\pm }$|0.0077 | 0.9633|${\pm }$|0.0011 | 0.9430|${\pm }$|0.0029 | 0.7384|${\pm }$|0.0161 | 0.8590|${\pm }$|0.0112 | |
64 | 0.8915|${\pm }$|0.0070 | 0.9644|${\pm }$|0.0041 | 0.9485|${\pm }$|0.0049 | 0.7367|${\pm }$|0.0077 | 0.8576|${\pm }$|0.0037 | |
128 | 0.8919|${\pm }$|0.0017 | 0.9658|${\pm }$|0.0026 | 0.9450|${\pm }$|0.0037 | 0.7393|${\pm }$|0.0041 | 0.8592|${\pm }$|0.0031 | |
256 | 0.8864|${\pm }$|0.0029 | 0.9632|${\pm }$|0.0003 | 0.9426|${\pm }$|0.0006 | 0.7317|${\pm }$|0.0060 | 0.8542|${\pm }$|0.0035 | |
512 | 0.8762|${\pm }$|0.0072 | 0.9560|${\pm }$|0.0085 | 0.9388|${\pm }$|0.0071 | 0.7249|${\pm }$|0.0004 | 0.8371|${\pm }$|0.0007 | |
DrugVirus | 16 | 0.8071|${\pm }$|0.0100 | 0.8748|${\pm }$|0.0088 | 0.8469|${\pm }$|0.0121 | 0.6002|${\pm }$|0.0172 | 0.7845|${\pm }$|0.0059 |
32 | 0.8165|${\pm }$|0.0132 | 0.8843|${\pm }$|0.0007 | 0.8575|${\pm }$|0.0109 | 0.6027|${\pm }$|0.0117 | 0.7899|${\pm }$|0.0048 | |
64 | 0.8196|${\pm }$|0.0080 | 0.8861|${\pm }$|0.0110 | 0.8572|${\pm }$|0.0173 | 0.6109|${\pm }$|0.0272 | 0.7955|${\pm }$|0.0148 | |
128 | 0.8133|${\pm }$|0.0082 | 0.8834|${\pm }$|0.0064 | 0.8637|${\pm }$|0.0096 | 0.6141|${\pm }$|0.0063 | 0.7981|${\pm }$|0.0016 | |
256 | 0.8096|${\pm }$|0.0032 | 0.8769|${\pm }$|0.0028 | 0.8611|${\pm }$|0.0069 | 0.6218|${\pm }$|0.0092 | 0.7979|${\pm }$|0.0076 | |
512 | 0.8031|${\pm }$|0.0024 | 0.8713|${\pm }$|0.0026 | 0.8624|${\pm }$|0.0014 | 0.5974|${\pm }$|0.0212 | 0.7881|${\pm }$|0.0121 |
Dataset . | Embedding size . | ACC . | AUC . | AUPRC . | MCC . | F1 . |
---|---|---|---|---|---|---|
MDAD | 16 | 0.8582|$\pm $| 0.0052 | 0.9478|${\pm }$|0.0031 | 0.9243|${\pm }$|0.0045 | 0.7329|${\pm }$|0.0121 | 0.8409|${\pm }$|0.0027 |
32 | 0.8659|${\pm }$|0.0036 | 0.9506|${\pm }$|0.0019 | 0.9364|${\pm }$|0.0044 | 0.7352|${\pm }$|0.0062 | 0.8485|${\pm }$|0.0027 | |
64 | 0.8701|${\pm }$|0.0045 | 0.9548|${\pm }$|0.0022 | 0.9409|${\pm }$|0.0027 | 0.7365|${\pm }$|0.0061 | 0.8504|${\pm }$|0.0036 | |
128 | 0.8791|${\pm }$|0.0054 | 0.9573|${\pm }$|0.0020 | 0.9464|${\pm }$|0.0033 | 0.7261|${\pm }$|0.0025 | 0.8528|${\pm }$|0.0008 | |
256 | 0.8651|${\pm }$|0.0030 | 0.9511|${\pm }$|0.0043 | 0.9389|${\pm }$|0.0068 | 0.7008|${\pm }$|0.0249 | 0.8477|${\pm }$|0.0181 | |
512 | 0.8304|${\pm }$|0.0131 | 0.9446|${\pm }$|0.0035 | 0.9330|${\pm }$|0.0044 | 0.7093|${\pm }$|0.0156 | 0.8491|${\pm }$|0.0095 | |
aBiofilm | 16 | 0.8824|${\pm }$|0.0013 | 0.9538|${\pm }$|0.0028 | 0.9491|${\pm }$|0.0082 | 0.7316|${\pm }$|0.0013 | 0.8627|${\pm }$|0.0081 |
32 | 0.8907|${\pm }$|0.0077 | 0.9633|${\pm }$|0.0011 | 0.9430|${\pm }$|0.0029 | 0.7384|${\pm }$|0.0161 | 0.8590|${\pm }$|0.0112 | |
64 | 0.8915|${\pm }$|0.0070 | 0.9644|${\pm }$|0.0041 | 0.9485|${\pm }$|0.0049 | 0.7367|${\pm }$|0.0077 | 0.8576|${\pm }$|0.0037 | |
128 | 0.8919|${\pm }$|0.0017 | 0.9658|${\pm }$|0.0026 | 0.9450|${\pm }$|0.0037 | 0.7393|${\pm }$|0.0041 | 0.8592|${\pm }$|0.0031 | |
256 | 0.8864|${\pm }$|0.0029 | 0.9632|${\pm }$|0.0003 | 0.9426|${\pm }$|0.0006 | 0.7317|${\pm }$|0.0060 | 0.8542|${\pm }$|0.0035 | |
512 | 0.8762|${\pm }$|0.0072 | 0.9560|${\pm }$|0.0085 | 0.9388|${\pm }$|0.0071 | 0.7249|${\pm }$|0.0004 | 0.8371|${\pm }$|0.0007 | |
DrugVirus | 16 | 0.8071|${\pm }$|0.0100 | 0.8748|${\pm }$|0.0088 | 0.8469|${\pm }$|0.0121 | 0.6002|${\pm }$|0.0172 | 0.7845|${\pm }$|0.0059 |
32 | 0.8165|${\pm }$|0.0132 | 0.8843|${\pm }$|0.0007 | 0.8575|${\pm }$|0.0109 | 0.6027|${\pm }$|0.0117 | 0.7899|${\pm }$|0.0048 | |
64 | 0.8196|${\pm }$|0.0080 | 0.8861|${\pm }$|0.0110 | 0.8572|${\pm }$|0.0173 | 0.6109|${\pm }$|0.0272 | 0.7955|${\pm }$|0.0148 | |
128 | 0.8133|${\pm }$|0.0082 | 0.8834|${\pm }$|0.0064 | 0.8637|${\pm }$|0.0096 | 0.6141|${\pm }$|0.0063 | 0.7981|${\pm }$|0.0016 | |
256 | 0.8096|${\pm }$|0.0032 | 0.8769|${\pm }$|0.0028 | 0.8611|${\pm }$|0.0069 | 0.6218|${\pm }$|0.0092 | 0.7979|${\pm }$|0.0076 | |
512 | 0.8031|${\pm }$|0.0024 | 0.8713|${\pm }$|0.0026 | 0.8624|${\pm }$|0.0014 | 0.5974|${\pm }$|0.0212 | 0.7881|${\pm }$|0.0121 |
Note: The best results are marked in bold.
The performance of SCSMDA under different embedding sizes on MDAD, aBiofilm and DrugVirus datasets.
Dataset . | Embedding size . | ACC . | AUC . | AUPRC . | MCC . | F1 . |
---|---|---|---|---|---|---|
MDAD | 16 | 0.8582|$\pm $| 0.0052 | 0.9478|${\pm }$|0.0031 | 0.9243|${\pm }$|0.0045 | 0.7329|${\pm }$|0.0121 | 0.8409|${\pm }$|0.0027 |
32 | 0.8659|${\pm }$|0.0036 | 0.9506|${\pm }$|0.0019 | 0.9364|${\pm }$|0.0044 | 0.7352|${\pm }$|0.0062 | 0.8485|${\pm }$|0.0027 | |
64 | 0.8701|${\pm }$|0.0045 | 0.9548|${\pm }$|0.0022 | 0.9409|${\pm }$|0.0027 | 0.7365|${\pm }$|0.0061 | 0.8504|${\pm }$|0.0036 | |
128 | 0.8791|${\pm }$|0.0054 | 0.9573|${\pm }$|0.0020 | 0.9464|${\pm }$|0.0033 | 0.7261|${\pm }$|0.0025 | 0.8528|${\pm }$|0.0008 | |
256 | 0.8651|${\pm }$|0.0030 | 0.9511|${\pm }$|0.0043 | 0.9389|${\pm }$|0.0068 | 0.7008|${\pm }$|0.0249 | 0.8477|${\pm }$|0.0181 | |
512 | 0.8304|${\pm }$|0.0131 | 0.9446|${\pm }$|0.0035 | 0.9330|${\pm }$|0.0044 | 0.7093|${\pm }$|0.0156 | 0.8491|${\pm }$|0.0095 | |
aBiofilm | 16 | 0.8824|${\pm }$|0.0013 | 0.9538|${\pm }$|0.0028 | 0.9491|${\pm }$|0.0082 | 0.7316|${\pm }$|0.0013 | 0.8627|${\pm }$|0.0081 |
32 | 0.8907|${\pm }$|0.0077 | 0.9633|${\pm }$|0.0011 | 0.9430|${\pm }$|0.0029 | 0.7384|${\pm }$|0.0161 | 0.8590|${\pm }$|0.0112 | |
64 | 0.8915|${\pm }$|0.0070 | 0.9644|${\pm }$|0.0041 | 0.9485|${\pm }$|0.0049 | 0.7367|${\pm }$|0.0077 | 0.8576|${\pm }$|0.0037 | |
128 | 0.8919|${\pm }$|0.0017 | 0.9658|${\pm }$|0.0026 | 0.9450|${\pm }$|0.0037 | 0.7393|${\pm }$|0.0041 | 0.8592|${\pm }$|0.0031 | |
256 | 0.8864|${\pm }$|0.0029 | 0.9632|${\pm }$|0.0003 | 0.9426|${\pm }$|0.0006 | 0.7317|${\pm }$|0.0060 | 0.8542|${\pm }$|0.0035 | |
512 | 0.8762|${\pm }$|0.0072 | 0.9560|${\pm }$|0.0085 | 0.9388|${\pm }$|0.0071 | 0.7249|${\pm }$|0.0004 | 0.8371|${\pm }$|0.0007 | |
DrugVirus | 16 | 0.8071|${\pm }$|0.0100 | 0.8748|${\pm }$|0.0088 | 0.8469|${\pm }$|0.0121 | 0.6002|${\pm }$|0.0172 | 0.7845|${\pm }$|0.0059 |
32 | 0.8165|${\pm }$|0.0132 | 0.8843|${\pm }$|0.0007 | 0.8575|${\pm }$|0.0109 | 0.6027|${\pm }$|0.0117 | 0.7899|${\pm }$|0.0048 | |
64 | 0.8196|${\pm }$|0.0080 | 0.8861|${\pm }$|0.0110 | 0.8572|${\pm }$|0.0173 | 0.6109|${\pm }$|0.0272 | 0.7955|${\pm }$|0.0148 | |
128 | 0.8133|${\pm }$|0.0082 | 0.8834|${\pm }$|0.0064 | 0.8637|${\pm }$|0.0096 | 0.6141|${\pm }$|0.0063 | 0.7981|${\pm }$|0.0016 | |
256 | 0.8096|${\pm }$|0.0032 | 0.8769|${\pm }$|0.0028 | 0.8611|${\pm }$|0.0069 | 0.6218|${\pm }$|0.0092 | 0.7979|${\pm }$|0.0076 | |
512 | 0.8031|${\pm }$|0.0024 | 0.8713|${\pm }$|0.0026 | 0.8624|${\pm }$|0.0014 | 0.5974|${\pm }$|0.0212 | 0.7881|${\pm }$|0.0121 |
Dataset . | Embedding size . | ACC . | AUC . | AUPRC . | MCC . | F1 . |
---|---|---|---|---|---|---|
MDAD | 16 | 0.8582|$\pm $| 0.0052 | 0.9478|${\pm }$|0.0031 | 0.9243|${\pm }$|0.0045 | 0.7329|${\pm }$|0.0121 | 0.8409|${\pm }$|0.0027 |
32 | 0.8659|${\pm }$|0.0036 | 0.9506|${\pm }$|0.0019 | 0.9364|${\pm }$|0.0044 | 0.7352|${\pm }$|0.0062 | 0.8485|${\pm }$|0.0027 | |
64 | 0.8701|${\pm }$|0.0045 | 0.9548|${\pm }$|0.0022 | 0.9409|${\pm }$|0.0027 | 0.7365|${\pm }$|0.0061 | 0.8504|${\pm }$|0.0036 | |
128 | 0.8791|${\pm }$|0.0054 | 0.9573|${\pm }$|0.0020 | 0.9464|${\pm }$|0.0033 | 0.7261|${\pm }$|0.0025 | 0.8528|${\pm }$|0.0008 | |
256 | 0.8651|${\pm }$|0.0030 | 0.9511|${\pm }$|0.0043 | 0.9389|${\pm }$|0.0068 | 0.7008|${\pm }$|0.0249 | 0.8477|${\pm }$|0.0181 | |
512 | 0.8304|${\pm }$|0.0131 | 0.9446|${\pm }$|0.0035 | 0.9330|${\pm }$|0.0044 | 0.7093|${\pm }$|0.0156 | 0.8491|${\pm }$|0.0095 | |
aBiofilm | 16 | 0.8824|${\pm }$|0.0013 | 0.9538|${\pm }$|0.0028 | 0.9491|${\pm }$|0.0082 | 0.7316|${\pm }$|0.0013 | 0.8627|${\pm }$|0.0081 |
32 | 0.8907|${\pm }$|0.0077 | 0.9633|${\pm }$|0.0011 | 0.9430|${\pm }$|0.0029 | 0.7384|${\pm }$|0.0161 | 0.8590|${\pm }$|0.0112 | |
64 | 0.8915|${\pm }$|0.0070 | 0.9644|${\pm }$|0.0041 | 0.9485|${\pm }$|0.0049 | 0.7367|${\pm }$|0.0077 | 0.8576|${\pm }$|0.0037 | |
128 | 0.8919|${\pm }$|0.0017 | 0.9658|${\pm }$|0.0026 | 0.9450|${\pm }$|0.0037 | 0.7393|${\pm }$|0.0041 | 0.8592|${\pm }$|0.0031 | |
256 | 0.8864|${\pm }$|0.0029 | 0.9632|${\pm }$|0.0003 | 0.9426|${\pm }$|0.0006 | 0.7317|${\pm }$|0.0060 | 0.8542|${\pm }$|0.0035 | |
512 | 0.8762|${\pm }$|0.0072 | 0.9560|${\pm }$|0.0085 | 0.9388|${\pm }$|0.0071 | 0.7249|${\pm }$|0.0004 | 0.8371|${\pm }$|0.0007 | |
DrugVirus | 16 | 0.8071|${\pm }$|0.0100 | 0.8748|${\pm }$|0.0088 | 0.8469|${\pm }$|0.0121 | 0.6002|${\pm }$|0.0172 | 0.7845|${\pm }$|0.0059 |
32 | 0.8165|${\pm }$|0.0132 | 0.8843|${\pm }$|0.0007 | 0.8575|${\pm }$|0.0109 | 0.6027|${\pm }$|0.0117 | 0.7899|${\pm }$|0.0048 | |
64 | 0.8196|${\pm }$|0.0080 | 0.8861|${\pm }$|0.0110 | 0.8572|${\pm }$|0.0173 | 0.6109|${\pm }$|0.0272 | 0.7955|${\pm }$|0.0148 | |
128 | 0.8133|${\pm }$|0.0082 | 0.8834|${\pm }$|0.0064 | 0.8637|${\pm }$|0.0096 | 0.6141|${\pm }$|0.0063 | 0.7981|${\pm }$|0.0016 | |
256 | 0.8096|${\pm }$|0.0032 | 0.8769|${\pm }$|0.0028 | 0.8611|${\pm }$|0.0069 | 0.6218|${\pm }$|0.0092 | 0.7979|${\pm }$|0.0076 | |
512 | 0.8031|${\pm }$|0.0024 | 0.8713|${\pm }$|0.0026 | 0.8624|${\pm }$|0.0014 | 0.5974|${\pm }$|0.0212 | 0.7881|${\pm }$|0.0121 |
Note: The best results are marked in bold.
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