. | . | Centromere 2 . | Centromere 5 . | ||||
---|---|---|---|---|---|---|---|
Inbred . | Estimated % B73 . | Center of mass (Mb) . | Shift relative to average (Mb) . | CENH3 fold enrichment . | Center of mass (Mb) . | Shift relative to average (Mb) . | CENH3 fold enrichment . |
B73 (reference) | 100 | 94.44 | −0.01 | 56 | 103.02 | 0.05 | 75 |
B73 (selfed sibling 1) | 100 | 94.44 | −0.01 | 63 | 103.01 | 0.07 | 83 |
B73 (selfed sibling 2) | 100 | 94.42 | 0.01 | 56 | 103.05 | 0.02 | 75 |
B73 (distant kin) | 100 | 94.45 | −0.01 | 45 | 103.02 | 0.05 | 50 |
F42 | 100 | 94.44 | −0.01 | 54 | 103.09 | −0.01 | 65 |
DJ7 | 100 | 94.46 | −0.03 | 44 | 103.05 | 0.02 | 59 |
LH119 | 80 | 94.42 | 0.02 | 51 | 103.09 | −0.01 | 66 |
LH132 | 80 | 94.45 | −0.01 | 36 | 103.16 | −0.09 | 42 |
LH149 | 80 | 94.40 | 0.03 | 48 | 103.08 | −0.01 | 56 |
LP5 | 80 | 94.34 | 0.10 | 48 | 103.15 | −0.08 | 50 |
NS701 | 60 | 94.54 | −0.10 | 34 | |||
PHG86 | 60 | 103.08 | −0.01 | 62 | |||
LH74 | 50 | 94.42 | 0.01 | 52 |
. | . | Centromere 2 . | Centromere 5 . | ||||
---|---|---|---|---|---|---|---|
Inbred . | Estimated % B73 . | Center of mass (Mb) . | Shift relative to average (Mb) . | CENH3 fold enrichment . | Center of mass (Mb) . | Shift relative to average (Mb) . | CENH3 fold enrichment . |
B73 (reference) | 100 | 94.44 | −0.01 | 56 | 103.02 | 0.05 | 75 |
B73 (selfed sibling 1) | 100 | 94.44 | −0.01 | 63 | 103.01 | 0.07 | 83 |
B73 (selfed sibling 2) | 100 | 94.42 | 0.01 | 56 | 103.05 | 0.02 | 75 |
B73 (distant kin) | 100 | 94.45 | −0.01 | 45 | 103.02 | 0.05 | 50 |
F42 | 100 | 94.44 | −0.01 | 54 | 103.09 | −0.01 | 65 |
DJ7 | 100 | 94.46 | −0.03 | 44 | 103.05 | 0.02 | 59 |
LH119 | 80 | 94.42 | 0.02 | 51 | 103.09 | −0.01 | 66 |
LH132 | 80 | 94.45 | −0.01 | 36 | 103.16 | −0.09 | 42 |
LH149 | 80 | 94.40 | 0.03 | 48 | 103.08 | −0.01 | 56 |
LP5 | 80 | 94.34 | 0.10 | 48 | 103.15 | −0.08 | 50 |
NS701 | 60 | 94.54 | −0.10 | 34 | |||
PHG86 | 60 | 103.08 | −0.01 | 62 | |||
LH74 | 50 | 94.42 | 0.01 | 52 |
For the centromeres that were similar to B73 among the inbreds, we measured the center of mass of CENH3 enrichment by treating each centromere as a series of discrete 20-kb loci and by multiplying the value for CENH3 enrichment by the chromosomal position of each locus. We defined “shift” to be the difference between the center of mass for a particular sample and the average center of mass for the whole group. “Estimated % B73” indicates the total amount of genomic DNA contributed by B73 during the production of each inbred (Nelson et al. 2008). In addition to the B73 and nine of the B73-related inbreds already discussed (PHW17 was excluded because neither its centromere 2 nor centromere 5 are B73-like), we included three other B73 sample populations. Two of the B73 samples had been separated from the first B73 (“reference”) by two generations of self-crosses (“selfed sibling 1” and “selfed sibling 2”), and one B73 had been separated from the first by an unknown number of generations (“distant kin”; the last common ancestor is documented as more than six generations earlier). For a high-resolution view of CENH3 distributions across centromeres, see Figure 4.
. | . | Centromere 2 . | Centromere 5 . | ||||
---|---|---|---|---|---|---|---|
Inbred . | Estimated % B73 . | Center of mass (Mb) . | Shift relative to average (Mb) . | CENH3 fold enrichment . | Center of mass (Mb) . | Shift relative to average (Mb) . | CENH3 fold enrichment . |
B73 (reference) | 100 | 94.44 | −0.01 | 56 | 103.02 | 0.05 | 75 |
B73 (selfed sibling 1) | 100 | 94.44 | −0.01 | 63 | 103.01 | 0.07 | 83 |
B73 (selfed sibling 2) | 100 | 94.42 | 0.01 | 56 | 103.05 | 0.02 | 75 |
B73 (distant kin) | 100 | 94.45 | −0.01 | 45 | 103.02 | 0.05 | 50 |
F42 | 100 | 94.44 | −0.01 | 54 | 103.09 | −0.01 | 65 |
DJ7 | 100 | 94.46 | −0.03 | 44 | 103.05 | 0.02 | 59 |
LH119 | 80 | 94.42 | 0.02 | 51 | 103.09 | −0.01 | 66 |
LH132 | 80 | 94.45 | −0.01 | 36 | 103.16 | −0.09 | 42 |
LH149 | 80 | 94.40 | 0.03 | 48 | 103.08 | −0.01 | 56 |
LP5 | 80 | 94.34 | 0.10 | 48 | 103.15 | −0.08 | 50 |
NS701 | 60 | 94.54 | −0.10 | 34 | |||
PHG86 | 60 | 103.08 | −0.01 | 62 | |||
LH74 | 50 | 94.42 | 0.01 | 52 |
. | . | Centromere 2 . | Centromere 5 . | ||||
---|---|---|---|---|---|---|---|
Inbred . | Estimated % B73 . | Center of mass (Mb) . | Shift relative to average (Mb) . | CENH3 fold enrichment . | Center of mass (Mb) . | Shift relative to average (Mb) . | CENH3 fold enrichment . |
B73 (reference) | 100 | 94.44 | −0.01 | 56 | 103.02 | 0.05 | 75 |
B73 (selfed sibling 1) | 100 | 94.44 | −0.01 | 63 | 103.01 | 0.07 | 83 |
B73 (selfed sibling 2) | 100 | 94.42 | 0.01 | 56 | 103.05 | 0.02 | 75 |
B73 (distant kin) | 100 | 94.45 | −0.01 | 45 | 103.02 | 0.05 | 50 |
F42 | 100 | 94.44 | −0.01 | 54 | 103.09 | −0.01 | 65 |
DJ7 | 100 | 94.46 | −0.03 | 44 | 103.05 | 0.02 | 59 |
LH119 | 80 | 94.42 | 0.02 | 51 | 103.09 | −0.01 | 66 |
LH132 | 80 | 94.45 | −0.01 | 36 | 103.16 | −0.09 | 42 |
LH149 | 80 | 94.40 | 0.03 | 48 | 103.08 | −0.01 | 56 |
LP5 | 80 | 94.34 | 0.10 | 48 | 103.15 | −0.08 | 50 |
NS701 | 60 | 94.54 | −0.10 | 34 | |||
PHG86 | 60 | 103.08 | −0.01 | 62 | |||
LH74 | 50 | 94.42 | 0.01 | 52 |
For the centromeres that were similar to B73 among the inbreds, we measured the center of mass of CENH3 enrichment by treating each centromere as a series of discrete 20-kb loci and by multiplying the value for CENH3 enrichment by the chromosomal position of each locus. We defined “shift” to be the difference between the center of mass for a particular sample and the average center of mass for the whole group. “Estimated % B73” indicates the total amount of genomic DNA contributed by B73 during the production of each inbred (Nelson et al. 2008). In addition to the B73 and nine of the B73-related inbreds already discussed (PHW17 was excluded because neither its centromere 2 nor centromere 5 are B73-like), we included three other B73 sample populations. Two of the B73 samples had been separated from the first B73 (“reference”) by two generations of self-crosses (“selfed sibling 1” and “selfed sibling 2”), and one B73 had been separated from the first by an unknown number of generations (“distant kin”; the last common ancestor is documented as more than six generations earlier). For a high-resolution view of CENH3 distributions across centromeres, see Figure 4.
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