Table 2
Center of CENH3 mass positions in centromeres 2 and 5 of B73 and related inbreds
Centromere 2Centromere 5
InbredEstimated % B73Center of mass (Mb)Shift relative to average (Mb)CENH3 fold enrichmentCenter of mass (Mb)Shift relative to average (Mb)CENH3 fold enrichment
B73 (reference)10094.44−0.0156103.020.0575
B73 (selfed sibling 1)10094.44−0.0163103.010.0783
B73 (selfed sibling 2)10094.420.0156103.050.0275
B73 (distant kin)10094.45−0.0145103.020.0550
F4210094.44−0.0154103.09−0.0165
DJ710094.46−0.0344103.050.0259
LH1198094.420.0251103.09−0.0166
LH1328094.45−0.0136103.16−0.0942
LH1498094.400.0348103.08−0.0156
LP58094.340.1048103.15−0.0850
NS7016094.54−0.1034
PHG8660103.08−0.0162
LH745094.420.0152
Centromere 2Centromere 5
InbredEstimated % B73Center of mass (Mb)Shift relative to average (Mb)CENH3 fold enrichmentCenter of mass (Mb)Shift relative to average (Mb)CENH3 fold enrichment
B73 (reference)10094.44−0.0156103.020.0575
B73 (selfed sibling 1)10094.44−0.0163103.010.0783
B73 (selfed sibling 2)10094.420.0156103.050.0275
B73 (distant kin)10094.45−0.0145103.020.0550
F4210094.44−0.0154103.09−0.0165
DJ710094.46−0.0344103.050.0259
LH1198094.420.0251103.09−0.0166
LH1328094.45−0.0136103.16−0.0942
LH1498094.400.0348103.08−0.0156
LP58094.340.1048103.15−0.0850
NS7016094.54−0.1034
PHG8660103.08−0.0162
LH745094.420.0152

For the centromeres that were similar to B73 among the inbreds, we measured the center of mass of CENH3 enrichment by treating each centromere as a series of discrete 20-kb loci and by multiplying the value for CENH3 enrichment by the chromosomal position of each locus. We defined “shift” to be the difference between the center of mass for a particular sample and the average center of mass for the whole group. “Estimated % B73” indicates the total amount of genomic DNA contributed by B73 during the production of each inbred (Nelson et al. 2008). In addition to the B73 and nine of the B73-related inbreds already discussed (PHW17 was excluded because neither its centromere 2 nor centromere 5 are B73-like), we included three other B73 sample populations. Two of the B73 samples had been separated from the first B73 (“reference”) by two generations of self-crosses (“selfed sibling 1” and “selfed sibling 2”), and one B73 had been separated from the first by an unknown number of generations (“distant kin”; the last common ancestor is documented as more than six generations earlier). For a high-resolution view of CENH3 distributions across centromeres, see Figure 4.

Table 2
Center of CENH3 mass positions in centromeres 2 and 5 of B73 and related inbreds
Centromere 2Centromere 5
InbredEstimated % B73Center of mass (Mb)Shift relative to average (Mb)CENH3 fold enrichmentCenter of mass (Mb)Shift relative to average (Mb)CENH3 fold enrichment
B73 (reference)10094.44−0.0156103.020.0575
B73 (selfed sibling 1)10094.44−0.0163103.010.0783
B73 (selfed sibling 2)10094.420.0156103.050.0275
B73 (distant kin)10094.45−0.0145103.020.0550
F4210094.44−0.0154103.09−0.0165
DJ710094.46−0.0344103.050.0259
LH1198094.420.0251103.09−0.0166
LH1328094.45−0.0136103.16−0.0942
LH1498094.400.0348103.08−0.0156
LP58094.340.1048103.15−0.0850
NS7016094.54−0.1034
PHG8660103.08−0.0162
LH745094.420.0152
Centromere 2Centromere 5
InbredEstimated % B73Center of mass (Mb)Shift relative to average (Mb)CENH3 fold enrichmentCenter of mass (Mb)Shift relative to average (Mb)CENH3 fold enrichment
B73 (reference)10094.44−0.0156103.020.0575
B73 (selfed sibling 1)10094.44−0.0163103.010.0783
B73 (selfed sibling 2)10094.420.0156103.050.0275
B73 (distant kin)10094.45−0.0145103.020.0550
F4210094.44−0.0154103.09−0.0165
DJ710094.46−0.0344103.050.0259
LH1198094.420.0251103.09−0.0166
LH1328094.45−0.0136103.16−0.0942
LH1498094.400.0348103.08−0.0156
LP58094.340.1048103.15−0.0850
NS7016094.54−0.1034
PHG8660103.08−0.0162
LH745094.420.0152

For the centromeres that were similar to B73 among the inbreds, we measured the center of mass of CENH3 enrichment by treating each centromere as a series of discrete 20-kb loci and by multiplying the value for CENH3 enrichment by the chromosomal position of each locus. We defined “shift” to be the difference between the center of mass for a particular sample and the average center of mass for the whole group. “Estimated % B73” indicates the total amount of genomic DNA contributed by B73 during the production of each inbred (Nelson et al. 2008). In addition to the B73 and nine of the B73-related inbreds already discussed (PHW17 was excluded because neither its centromere 2 nor centromere 5 are B73-like), we included three other B73 sample populations. Two of the B73 samples had been separated from the first B73 (“reference”) by two generations of self-crosses (“selfed sibling 1” and “selfed sibling 2”), and one B73 had been separated from the first by an unknown number of generations (“distant kin”; the last common ancestor is documented as more than six generations earlier). For a high-resolution view of CENH3 distributions across centromeres, see Figure 4.

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