Table 2. Open in new tab Performance...

numB^a	DISLOCATE	DMC^b	SVR^c	Cyscon^d	Cyscon^e	Cyscon^e	Cyscon^e
2	75	75	76.0	76.0	79.9	79.9	83.4	83.4	83.1	83.1	83.5	83.5	84.4	84.4
3	48	60	55.3	62.8	53.6	64.3	61.6	69.3	60.4	69.3	68.5	75.8	76.5	82.5
4	44	57	51.2	67.7	52.8	66.4	55.6	68.4	52.8	66.4	54.2	67.0	57.4	69.6
5	19	46	32.4	58.9	29.4	50.7	39.2	59.0	34.3	53.6	43.1	62.3	55.4	69.9
2–5	54	60	59.3	66.2	59.5	65.8	65.3	70.4	63.1	68.6	67.2	72.7	72.3	77.0
6–10^f	–	–	–	–	2.0	34.3	7.8	39.8	3.9	36.7	9.8	43.0	13.7	46.2

numB^a	DISLOCATE	DMC^b	SVR^c	Cyscon^d	Cyscon^e	Cyscon^e	Cyscon^e
2	75	75	76.0	76.0	79.9	79.9	83.4	83.4	83.1	83.1	83.5	83.5	84.4	84.4
3	48	60	55.3	62.8	53.6	64.3	61.6	69.3	60.4	69.3	68.5	75.8	76.5	82.5
4	44	57	51.2	67.7	52.8	66.4	55.6	68.4	52.8	66.4	54.2	67.0	57.4	69.6
5	19	46	32.4	58.9	29.4	50.7	39.2	59.0	34.3	53.6	43.1	62.3	55.4	69.9
2–5	54	60	59.3	66.2	59.5	65.8	65.3	70.4	63.1	68.6	67.2	72.7	72.3	77.0
6–10^f	–	–	–	–	2.0	34.3	7.8	39.8	3.9	36.7	9.8	43.0	13.7	46.2

Table 2.

Performance comparison with other methods on the PDBCYS dataset

numB^a	DISLOCATE		DMC^b		SVR^c		Cyscon^d		Cyscon^e		Cyscon^e		Cyscon^e
numB^a	Q_P	Q_C	Q_P	Q_C	Q_P	Q_C	Q_P	Q_C	Q_P	Q_C	Q_P	Q_C	Q_P	Q_C
2	75	75	76.0	76.0	79.9	79.9	83.4	83.4	83.1	83.1	83.5	83.5	84.4	84.4
3	48	60	55.3	62.8	53.6	64.3	61.6	69.3	60.4	69.3	68.5	75.8	76.5	82.5
4	44	57	51.2	67.7	52.8	66.4	55.6	68.4	52.8	66.4	54.2	67.0	57.4	69.6
5	19	46	32.4	58.9	29.4	50.7	39.2	59.0	34.3	53.6	43.1	62.3	55.4	69.9
2–5	54	60	59.3	66.2	59.5	65.8	65.3	70.4	63.1	68.6	67.2	72.7	72.3	77.0
6–10^f	–	–	–	–	2.0	34.3	7.8	39.8	3.9	36.7	9.8	43.0	13.7	46.2

numB^a	DISLOCATE		DMC^b		SVR^c		Cyscon^d		Cyscon^e		Cyscon^e		Cyscon^e
numB^a	Q_P	Q_C	Q_P	Q_C	Q_P	Q_C	Q_P	Q_C	Q_P	Q_C	Q_P	Q_C	Q_P	Q_C
2	75	75	76.0	76.0	79.9	79.9	83.4	83.4	83.1	83.1	83.5	83.5	84.4	84.4
3	48	60	55.3	62.8	53.6	64.3	61.6	69.3	60.4	69.3	68.5	75.8	76.5	82.5
4	44	57	51.2	67.7	52.8	66.4	55.6	68.4	52.8	66.4	54.2	67.0	57.4	69.6
5	19	46	32.4	58.9	29.4	50.7	39.2	59.0	34.3	53.6	43.1	62.3	55.4	69.9
2–5	54	60	59.3	66.2	59.5	65.8	65.3	70.4	63.1	68.6	67.2	72.7	72.3	77.0
6–10^f	–	–	–	–	2.0	34.3	7.8	39.8	3.9	36.7	9.8	43.0	13.7	46.2

^aNumber of bonds.

^bDISLOCATE + MIp + iCOV.

^cPure SVR model trained with four types of sequential features.

^dConfident bond detections were derived from 20-fold cross-validation on the PDBCYS dataset.

^ebDD was used as the searching pool and the searched sequence shares no more than the certain sequence identities with the query sequence (15, 20 and 25%, respectively).

^fOverall results for proteins with the number of disulfide bonds from 6 to 10, where no results reported in DISLOCATE and DMC for this group.

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