Percentages of reads identified as artifacts in five sequencing runs at varying FDR thresholds
| Description . | Accession . | Sequences . | FDR 0.05 (%) . | FDR 0.01 (%) . | FDR 0.001 (%) . | CPU sec. . |
|---|---|---|---|---|---|---|
| Genomic PE (18 nt) | ERR000017 | 6 381 596 | 1.4 (98.79) | 0.4 (98.91) | 0.1 (98.61) | 28 |
| Genomic PE (36 nt) | ERR000130 | 10 209 914 | 3.2 (84.05) | 0.8 (52.72) | 0.4 (11.44) | 84 |
| Genomic (25 nt) | SRR000723 | 7 230 975 | 1.7 (57.64) | 0.5 (54.26) | 0.1 (36.44) | 45 |
| Chip-Seq (25 nt) | SRR000731 | 6 011 079 | 3.7 (29.15) | 2.5 (12.81) | 2.0 (1.73) | 37 |
| RNA-Seq (33 nt) | SRR002052 | 12 099 833 | 1.8 (23.32) | 0.6 (22.30) | 0.1 (20.38) | 103 |
| Description . | Accession . | Sequences . | FDR 0.05 (%) . | FDR 0.01 (%) . | FDR 0.001 (%) . | CPU sec. . |
|---|---|---|---|---|---|---|
| Genomic PE (18 nt) | ERR000017 | 6 381 596 | 1.4 (98.79) | 0.4 (98.91) | 0.1 (98.61) | 28 |
| Genomic PE (36 nt) | ERR000130 | 10 209 914 | 3.2 (84.05) | 0.8 (52.72) | 0.4 (11.44) | 84 |
| Genomic (25 nt) | SRR000723 | 7 230 975 | 1.7 (57.64) | 0.5 (54.26) | 0.1 (36.44) | 45 |
| Chip-Seq (25 nt) | SRR000731 | 6 011 079 | 3.7 (29.15) | 2.5 (12.81) | 2.0 (1.73) | 37 |
| RNA-Seq (33 nt) | SRR002052 | 12 099 833 | 1.8 (23.32) | 0.6 (22.30) | 0.1 (20.38) | 103 |
The mapping rates of the artifactual sequences to the human genome are indicated in brackets. The last column lists the runtime of TagDust in CPU seconds for the 0.05 FDR cutoff.
Percentages of reads identified as artifacts in five sequencing runs at varying FDR thresholds
| Description . | Accession . | Sequences . | FDR 0.05 (%) . | FDR 0.01 (%) . | FDR 0.001 (%) . | CPU sec. . |
|---|---|---|---|---|---|---|
| Genomic PE (18 nt) | ERR000017 | 6 381 596 | 1.4 (98.79) | 0.4 (98.91) | 0.1 (98.61) | 28 |
| Genomic PE (36 nt) | ERR000130 | 10 209 914 | 3.2 (84.05) | 0.8 (52.72) | 0.4 (11.44) | 84 |
| Genomic (25 nt) | SRR000723 | 7 230 975 | 1.7 (57.64) | 0.5 (54.26) | 0.1 (36.44) | 45 |
| Chip-Seq (25 nt) | SRR000731 | 6 011 079 | 3.7 (29.15) | 2.5 (12.81) | 2.0 (1.73) | 37 |
| RNA-Seq (33 nt) | SRR002052 | 12 099 833 | 1.8 (23.32) | 0.6 (22.30) | 0.1 (20.38) | 103 |
| Description . | Accession . | Sequences . | FDR 0.05 (%) . | FDR 0.01 (%) . | FDR 0.001 (%) . | CPU sec. . |
|---|---|---|---|---|---|---|
| Genomic PE (18 nt) | ERR000017 | 6 381 596 | 1.4 (98.79) | 0.4 (98.91) | 0.1 (98.61) | 28 |
| Genomic PE (36 nt) | ERR000130 | 10 209 914 | 3.2 (84.05) | 0.8 (52.72) | 0.4 (11.44) | 84 |
| Genomic (25 nt) | SRR000723 | 7 230 975 | 1.7 (57.64) | 0.5 (54.26) | 0.1 (36.44) | 45 |
| Chip-Seq (25 nt) | SRR000731 | 6 011 079 | 3.7 (29.15) | 2.5 (12.81) | 2.0 (1.73) | 37 |
| RNA-Seq (33 nt) | SRR002052 | 12 099 833 | 1.8 (23.32) | 0.6 (22.30) | 0.1 (20.38) | 103 |
The mapping rates of the artifactual sequences to the human genome are indicated in brackets. The last column lists the runtime of TagDust in CPU seconds for the 0.05 FDR cutoff.
This PDF is available to Subscribers Only
View Article Abstract & Purchase OptionsFor full access to this pdf, sign in to an existing account, or purchase an annual subscription.
