Table 1
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Overview of evaluated antibody data sets. For each data set, we provided the name of the data set, the ID, the mass instrument, the ionization type, the fragment ion resolution in FWHM, a reference and the number of proteolytic enzymes in the data set

Data set nameDatabase IDMass instrumentIonization typeResolutionRef.Enzymes
IgG1-HumanMSV000079801LTQ OrbitrapHCD17 500[27]Trypsin, chymotrypsin, asp-N, lys-C, glu-C, proteinase K
WIgG1-MouseMSV000079801LTQ OrbitrapHCD17 500[27]Trypsin, asp-N, chymotrypsin
HerceptinPXD023419Orbitrap FusionStepped HCD and EThcD30 000[12]Trypsin, thermolysin, lys-N, lys-C, glu-C, asp-N, aLP, chymotrypsin, elastase
Data set nameDatabase IDMass instrumentIonization typeResolutionRef.Enzymes
IgG1-HumanMSV000079801LTQ OrbitrapHCD17 500[27]Trypsin, chymotrypsin, asp-N, lys-C, glu-C, proteinase K
WIgG1-MouseMSV000079801LTQ OrbitrapHCD17 500[27]Trypsin, asp-N, chymotrypsin
HerceptinPXD023419Orbitrap FusionStepped HCD and EThcD30 000[12]Trypsin, thermolysin, lys-N, lys-C, glu-C, asp-N, aLP, chymotrypsin, elastase
Table 1
Open in new tab

Overview of evaluated antibody data sets. For each data set, we provided the name of the data set, the ID, the mass instrument, the ionization type, the fragment ion resolution in FWHM, a reference and the number of proteolytic enzymes in the data set

Data set nameDatabase IDMass instrumentIonization typeResolutionRef.Enzymes
IgG1-HumanMSV000079801LTQ OrbitrapHCD17 500[27]Trypsin, chymotrypsin, asp-N, lys-C, glu-C, proteinase K
WIgG1-MouseMSV000079801LTQ OrbitrapHCD17 500[27]Trypsin, asp-N, chymotrypsin
HerceptinPXD023419Orbitrap FusionStepped HCD and EThcD30 000[12]Trypsin, thermolysin, lys-N, lys-C, glu-C, asp-N, aLP, chymotrypsin, elastase
Data set nameDatabase IDMass instrumentIonization typeResolutionRef.Enzymes
IgG1-HumanMSV000079801LTQ OrbitrapHCD17 500[27]Trypsin, chymotrypsin, asp-N, lys-C, glu-C, proteinase K
WIgG1-MouseMSV000079801LTQ OrbitrapHCD17 500[27]Trypsin, asp-N, chymotrypsin
HerceptinPXD023419Orbitrap FusionStepped HCD and EThcD30 000[12]Trypsin, thermolysin, lys-N, lys-C, glu-C, asp-N, aLP, chymotrypsin, elastase
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