Table 1.

Selected gene expression changes from RNA-Seq

Gene nameFold change in L18 relative to L3Adjusted P valueFold change in L3 relative to SL1344Adjusted P valueFold change in L18 relative to SL1344Adjusted P value
Efflux genes
SL469acrA3.520.00061.950.03
SL468acrB20.261.08E−150.114.62E−102.210.01
SL2800emrB2.820.0070.330.002
SL3363acrE0.0855.37E−1167.806.22E−245.798.35E−05
SL3364acrF0.151.81E−077.401.64E-08
SL1505smvA0.081.48E−110.490.060.041.27E−17
Regulators
SL569ramA75.842.12E−2766.653.93E−26
SL4513rob
SL3362envR0.056.24E−1528.238.66E−19
Gene nameFold change in L18 relative to L3Adjusted P valueFold change in L3 relative to SL1344Adjusted P valueFold change in L18 relative to SL1344Adjusted P value
Efflux genes
SL469acrA3.520.00061.950.03
SL468acrB20.261.08E−150.114.62E−102.210.01
SL2800emrB2.820.0070.330.002
SL3363acrE0.0855.37E−1167.806.22E−245.798.35E−05
SL3364acrF0.151.81E−077.401.64E-08
SL1505smvA0.081.48E−110.490.060.041.27E−17
Regulators
SL569ramA75.842.12E−2766.653.93E−26
SL4513rob
SL3362envR0.056.24E−1528.238.66E−19

Only expression changes that were significantly changed are included in the table. Where no value is given there was no significant difference in expression between the two strains being compared.

Table 1.

Selected gene expression changes from RNA-Seq

Gene nameFold change in L18 relative to L3Adjusted P valueFold change in L3 relative to SL1344Adjusted P valueFold change in L18 relative to SL1344Adjusted P value
Efflux genes
SL469acrA3.520.00061.950.03
SL468acrB20.261.08E−150.114.62E−102.210.01
SL2800emrB2.820.0070.330.002
SL3363acrE0.0855.37E−1167.806.22E−245.798.35E−05
SL3364acrF0.151.81E−077.401.64E-08
SL1505smvA0.081.48E−110.490.060.041.27E−17
Regulators
SL569ramA75.842.12E−2766.653.93E−26
SL4513rob
SL3362envR0.056.24E−1528.238.66E−19
Gene nameFold change in L18 relative to L3Adjusted P valueFold change in L3 relative to SL1344Adjusted P valueFold change in L18 relative to SL1344Adjusted P value
Efflux genes
SL469acrA3.520.00061.950.03
SL468acrB20.261.08E−150.114.62E−102.210.01
SL2800emrB2.820.0070.330.002
SL3363acrE0.0855.37E−1167.806.22E−245.798.35E−05
SL3364acrF0.151.81E−077.401.64E-08
SL1505smvA0.081.48E−110.490.060.041.27E−17
Regulators
SL569ramA75.842.12E−2766.653.93E−26
SL4513rob
SL3362envR0.056.24E−1528.238.66E−19

Only expression changes that were significantly changed are included in the table. Where no value is given there was no significant difference in expression between the two strains being compared.

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