Table 1

Human diseases associated with mutations in spliceosome genes

GeneOMIM prevalent mutation sitesSpliceosome complexDiseaseInheritanceReferences
SNRPBVarious mutations in an alternatively spliced regulatory exonSmCerebro-costo-mandibular syndromeAD(Lynch et al. 2014; Bacrot et al. 2015; Tooley et al. 2016)
SNRPEc.1A>G (p.M1?); c.133G>A (p.G45S)SmHypotrichosis 11AD(Pasternack et al. 2013)
SF3B1Mutations clustered in exons 12 to 15; p.K700E; Other hotspots: p.E622; p.R625; p.H662; p.K666; p.I704; G742U2 snRNPMDS; CMML; AML; solid tumors(Papaemmanuil et al. 2011; Quesada et al. 2011; Wang et al. 2011; Harbour et al. 2013)
SF3B4None prevalent; various de novo mutations occur at several sitesU2 snRNPNager acrofacial dysostosisAD(Bernier et al. 2012; Petit et al. 2014)
EFTUD2Several either de novo 17q21.31 deletions encompassing EFTUD2 or de novo heterozygous EFTUD2 mutationsU5 snRNPMandibulofacial dysostosis type Guion-AlmeidaAD(Wieczorek et al. 2009; Lines et al. 2012)
PRPF6c.2185C>T (p.R729W)U5 snRNPRPAD(Tanackovic et al. 2011a)
PRPF8Various sites clustered within exon 42U5 snRNPRP; MDSAD(McKie et al. 2001; Towns et al. 2010; Maubaret et al. 2011; Kurtovic-Kozaric et al. 2015; Ruzickova and Stanek 2017)
SNRNP200c.2653C>G (p.Q885E)U5 snRNPRPAD(Zhao et al. 2006; Liu et al. 2012)
TXNL4AMost patients are compound heterozygous for a 34-bp deletion in the TXNL4A promoter (chr18:77,748,581-77,748,614del, GRCh37) and a truncating point mutation (e.g., c.131delT [p. Val44AlafsTer48] or another deletion (e.g., Ex3DEL)U5 snRNPBurn-McKeown syndromeAR(Wieczorek et al. 2014)
PRPF3Various (e.g., c.1482C>T [p.T494M]; c.1478C>T [p.P493S])U4/U6 snRNPRPAD(Chakarova et al. 2002; Tanackovic et al. 2011b)
PRPF4c.944C>T (p.P315L); c.-114_-97delU4/U6 snRNPRPAD(Chen et al. 2014)
PRPF31VariousU4/U6 snRNPRPAD(Vithana et al. 2001; Deery et al. 2002; Rivolta et al. 2006)
RNPC3Compound heterozygosity (p.P474T and p.R502*)U11/U12 snRNPIsolated growth hormone deficiency, type VAR(Argente et al., 2014)
RNU4ATACVariousU4atac snRNPLowry-Wood syndrome; Roifman syndrome; Microcephalic osteodysplastic primordial dwarfism type IAR(Edery et al., 2011; He et al., 2011; Merico et al., 2015; Scotti and Swanson, 2016)
PUF60VariousU2 snRNP; A complexVerheij syndromeAD(Dauber et al., 2013; Low et al., 2017)
U2AF1c.101G>A (p.S34F); c.101G>T (p.S34Y); c.470T>C (p.Q157R)U2 snRNP; A complexMDS(Graubert et al., 2011)
RBM10VariousRecruited at A complexTARP syndromeXLR(Johnston et al., 2010)
PQBP1VariousPRP19 complex; B complexRenpenning syndromeXLR(Kalscheuer et al., 2003)
CWC27VariousRecruited at Bact complexRP with or without skeletal anomaliesAR(Xu et al., 2017)
DHX16VariousRecruited at Bact complexNeuromuscular disease and ocular or auditory anomalies with or without seizuresAD(Paine et al., 2019)
PRCCReciprocal translocation between chromosomes X and 1, t(X;1)(p11.2;q21.2) creating a PRCC-TFE3 hybrid transcriptRecruited at Bact complexPapillary renal cell carcinoma(Sidhar et al., 1996)
RNF113AVariousRecruited at Bact complexNonphotosensitive trichothiodystrophy 5XLD(Corbett et al., 2015)
CXORF56c.159_160insTA (p.D54*)Recruited at C complexMental retardation, X-linked 107XL(Verkerk et al., 2018)
DDX41VariousRecruited at C complexSusceptibility to familial myeloproliferative/lymphoproliferative neoplasms (e.g., MDS and AML)AD(Polprasert et al., 2015)
EIF4A3Expanded 16-repeat allele (initial CACA-20-nt motif followed by 13 repeats of CGCA-20-nt, 1 CACA-20-nt, and 1 final CA-18-nt motif) in the 5′ UTREJC/mRNPRobin sequence with cleft mandible and limb anomaliesAR(Favaro et al., 2014)
RBM8A200-kb deletion on 1q21.1 plus an additional RBM8A mutation (site varies; e.g., c.-21G>A)EJC/mRNPThrombocytopenia-absent radius syndromeAR(Albers et al., 2012)
FUSVarioushnRNPALS(Reber et al., 2016)
HNRNPA1c.941A>T (p.D314V); c.940G>A (p.D314N); c.956A>G (p.N319S)hnRNPInclusion body myopathy with early-onset Paget disease without frontotemporal dementia 3; ALSAD(Kim et al., 2013)
SMN1VariousAll Sm snRNPsSpinal muscular atrophy; myeloid neoplasmsAR(Li et al., 2014; Yoshida and Ogawa, 2014; Malcovati et al., 2015; Verma et al., 2018)
GeneOMIM prevalent mutation sitesSpliceosome complexDiseaseInheritanceReferences
SNRPBVarious mutations in an alternatively spliced regulatory exonSmCerebro-costo-mandibular syndromeAD(Lynch et al. 2014; Bacrot et al. 2015; Tooley et al. 2016)
SNRPEc.1A>G (p.M1?); c.133G>A (p.G45S)SmHypotrichosis 11AD(Pasternack et al. 2013)
SF3B1Mutations clustered in exons 12 to 15; p.K700E; Other hotspots: p.E622; p.R625; p.H662; p.K666; p.I704; G742U2 snRNPMDS; CMML; AML; solid tumors(Papaemmanuil et al. 2011; Quesada et al. 2011; Wang et al. 2011; Harbour et al. 2013)
SF3B4None prevalent; various de novo mutations occur at several sitesU2 snRNPNager acrofacial dysostosisAD(Bernier et al. 2012; Petit et al. 2014)
EFTUD2Several either de novo 17q21.31 deletions encompassing EFTUD2 or de novo heterozygous EFTUD2 mutationsU5 snRNPMandibulofacial dysostosis type Guion-AlmeidaAD(Wieczorek et al. 2009; Lines et al. 2012)
PRPF6c.2185C>T (p.R729W)U5 snRNPRPAD(Tanackovic et al. 2011a)
PRPF8Various sites clustered within exon 42U5 snRNPRP; MDSAD(McKie et al. 2001; Towns et al. 2010; Maubaret et al. 2011; Kurtovic-Kozaric et al. 2015; Ruzickova and Stanek 2017)
SNRNP200c.2653C>G (p.Q885E)U5 snRNPRPAD(Zhao et al. 2006; Liu et al. 2012)
TXNL4AMost patients are compound heterozygous for a 34-bp deletion in the TXNL4A promoter (chr18:77,748,581-77,748,614del, GRCh37) and a truncating point mutation (e.g., c.131delT [p. Val44AlafsTer48] or another deletion (e.g., Ex3DEL)U5 snRNPBurn-McKeown syndromeAR(Wieczorek et al. 2014)
PRPF3Various (e.g., c.1482C>T [p.T494M]; c.1478C>T [p.P493S])U4/U6 snRNPRPAD(Chakarova et al. 2002; Tanackovic et al. 2011b)
PRPF4c.944C>T (p.P315L); c.-114_-97delU4/U6 snRNPRPAD(Chen et al. 2014)
PRPF31VariousU4/U6 snRNPRPAD(Vithana et al. 2001; Deery et al. 2002; Rivolta et al. 2006)
RNPC3Compound heterozygosity (p.P474T and p.R502*)U11/U12 snRNPIsolated growth hormone deficiency, type VAR(Argente et al., 2014)
RNU4ATACVariousU4atac snRNPLowry-Wood syndrome; Roifman syndrome; Microcephalic osteodysplastic primordial dwarfism type IAR(Edery et al., 2011; He et al., 2011; Merico et al., 2015; Scotti and Swanson, 2016)
PUF60VariousU2 snRNP; A complexVerheij syndromeAD(Dauber et al., 2013; Low et al., 2017)
U2AF1c.101G>A (p.S34F); c.101G>T (p.S34Y); c.470T>C (p.Q157R)U2 snRNP; A complexMDS(Graubert et al., 2011)
RBM10VariousRecruited at A complexTARP syndromeXLR(Johnston et al., 2010)
PQBP1VariousPRP19 complex; B complexRenpenning syndromeXLR(Kalscheuer et al., 2003)
CWC27VariousRecruited at Bact complexRP with or without skeletal anomaliesAR(Xu et al., 2017)
DHX16VariousRecruited at Bact complexNeuromuscular disease and ocular or auditory anomalies with or without seizuresAD(Paine et al., 2019)
PRCCReciprocal translocation between chromosomes X and 1, t(X;1)(p11.2;q21.2) creating a PRCC-TFE3 hybrid transcriptRecruited at Bact complexPapillary renal cell carcinoma(Sidhar et al., 1996)
RNF113AVariousRecruited at Bact complexNonphotosensitive trichothiodystrophy 5XLD(Corbett et al., 2015)
CXORF56c.159_160insTA (p.D54*)Recruited at C complexMental retardation, X-linked 107XL(Verkerk et al., 2018)
DDX41VariousRecruited at C complexSusceptibility to familial myeloproliferative/lymphoproliferative neoplasms (e.g., MDS and AML)AD(Polprasert et al., 2015)
EIF4A3Expanded 16-repeat allele (initial CACA-20-nt motif followed by 13 repeats of CGCA-20-nt, 1 CACA-20-nt, and 1 final CA-18-nt motif) in the 5′ UTREJC/mRNPRobin sequence with cleft mandible and limb anomaliesAR(Favaro et al., 2014)
RBM8A200-kb deletion on 1q21.1 plus an additional RBM8A mutation (site varies; e.g., c.-21G>A)EJC/mRNPThrombocytopenia-absent radius syndromeAR(Albers et al., 2012)
FUSVarioushnRNPALS(Reber et al., 2016)
HNRNPA1c.941A>T (p.D314V); c.940G>A (p.D314N); c.956A>G (p.N319S)hnRNPInclusion body myopathy with early-onset Paget disease without frontotemporal dementia 3; ALSAD(Kim et al., 2013)
SMN1VariousAll Sm snRNPsSpinal muscular atrophy; myeloid neoplasmsAR(Li et al., 2014; Yoshida and Ogawa, 2014; Malcovati et al., 2015; Verma et al., 2018)

AD autosomal dominant, ALS amyotrophic lateral sclerosis, AML acute myeloid leukemia, AR autosomal recessive, CMML, chronic myelomonocytic leukemia, EJC exon junction complex, hnRNP heterogeneous nuclear ribonucleoprotein, MDS myelodysplastic syndromes, mRNP messenger ribonucleoprotein, OMIM Online Mendelian Inheritance in Man®, RES retention and splicing, RP retinitis pigmentosa, XLD X-linked dominant, XLR X-linked recessive.

Table 1

Human diseases associated with mutations in spliceosome genes

GeneOMIM prevalent mutation sitesSpliceosome complexDiseaseInheritanceReferences
SNRPBVarious mutations in an alternatively spliced regulatory exonSmCerebro-costo-mandibular syndromeAD(Lynch et al. 2014; Bacrot et al. 2015; Tooley et al. 2016)
SNRPEc.1A>G (p.M1?); c.133G>A (p.G45S)SmHypotrichosis 11AD(Pasternack et al. 2013)
SF3B1Mutations clustered in exons 12 to 15; p.K700E; Other hotspots: p.E622; p.R625; p.H662; p.K666; p.I704; G742U2 snRNPMDS; CMML; AML; solid tumors(Papaemmanuil et al. 2011; Quesada et al. 2011; Wang et al. 2011; Harbour et al. 2013)
SF3B4None prevalent; various de novo mutations occur at several sitesU2 snRNPNager acrofacial dysostosisAD(Bernier et al. 2012; Petit et al. 2014)
EFTUD2Several either de novo 17q21.31 deletions encompassing EFTUD2 or de novo heterozygous EFTUD2 mutationsU5 snRNPMandibulofacial dysostosis type Guion-AlmeidaAD(Wieczorek et al. 2009; Lines et al. 2012)
PRPF6c.2185C>T (p.R729W)U5 snRNPRPAD(Tanackovic et al. 2011a)
PRPF8Various sites clustered within exon 42U5 snRNPRP; MDSAD(McKie et al. 2001; Towns et al. 2010; Maubaret et al. 2011; Kurtovic-Kozaric et al. 2015; Ruzickova and Stanek 2017)
SNRNP200c.2653C>G (p.Q885E)U5 snRNPRPAD(Zhao et al. 2006; Liu et al. 2012)
TXNL4AMost patients are compound heterozygous for a 34-bp deletion in the TXNL4A promoter (chr18:77,748,581-77,748,614del, GRCh37) and a truncating point mutation (e.g., c.131delT [p. Val44AlafsTer48] or another deletion (e.g., Ex3DEL)U5 snRNPBurn-McKeown syndromeAR(Wieczorek et al. 2014)
PRPF3Various (e.g., c.1482C>T [p.T494M]; c.1478C>T [p.P493S])U4/U6 snRNPRPAD(Chakarova et al. 2002; Tanackovic et al. 2011b)
PRPF4c.944C>T (p.P315L); c.-114_-97delU4/U6 snRNPRPAD(Chen et al. 2014)
PRPF31VariousU4/U6 snRNPRPAD(Vithana et al. 2001; Deery et al. 2002; Rivolta et al. 2006)
RNPC3Compound heterozygosity (p.P474T and p.R502*)U11/U12 snRNPIsolated growth hormone deficiency, type VAR(Argente et al., 2014)
RNU4ATACVariousU4atac snRNPLowry-Wood syndrome; Roifman syndrome; Microcephalic osteodysplastic primordial dwarfism type IAR(Edery et al., 2011; He et al., 2011; Merico et al., 2015; Scotti and Swanson, 2016)
PUF60VariousU2 snRNP; A complexVerheij syndromeAD(Dauber et al., 2013; Low et al., 2017)
U2AF1c.101G>A (p.S34F); c.101G>T (p.S34Y); c.470T>C (p.Q157R)U2 snRNP; A complexMDS(Graubert et al., 2011)
RBM10VariousRecruited at A complexTARP syndromeXLR(Johnston et al., 2010)
PQBP1VariousPRP19 complex; B complexRenpenning syndromeXLR(Kalscheuer et al., 2003)
CWC27VariousRecruited at Bact complexRP with or without skeletal anomaliesAR(Xu et al., 2017)
DHX16VariousRecruited at Bact complexNeuromuscular disease and ocular or auditory anomalies with or without seizuresAD(Paine et al., 2019)
PRCCReciprocal translocation between chromosomes X and 1, t(X;1)(p11.2;q21.2) creating a PRCC-TFE3 hybrid transcriptRecruited at Bact complexPapillary renal cell carcinoma(Sidhar et al., 1996)
RNF113AVariousRecruited at Bact complexNonphotosensitive trichothiodystrophy 5XLD(Corbett et al., 2015)
CXORF56c.159_160insTA (p.D54*)Recruited at C complexMental retardation, X-linked 107XL(Verkerk et al., 2018)
DDX41VariousRecruited at C complexSusceptibility to familial myeloproliferative/lymphoproliferative neoplasms (e.g., MDS and AML)AD(Polprasert et al., 2015)
EIF4A3Expanded 16-repeat allele (initial CACA-20-nt motif followed by 13 repeats of CGCA-20-nt, 1 CACA-20-nt, and 1 final CA-18-nt motif) in the 5′ UTREJC/mRNPRobin sequence with cleft mandible and limb anomaliesAR(Favaro et al., 2014)
RBM8A200-kb deletion on 1q21.1 plus an additional RBM8A mutation (site varies; e.g., c.-21G>A)EJC/mRNPThrombocytopenia-absent radius syndromeAR(Albers et al., 2012)
FUSVarioushnRNPALS(Reber et al., 2016)
HNRNPA1c.941A>T (p.D314V); c.940G>A (p.D314N); c.956A>G (p.N319S)hnRNPInclusion body myopathy with early-onset Paget disease without frontotemporal dementia 3; ALSAD(Kim et al., 2013)
SMN1VariousAll Sm snRNPsSpinal muscular atrophy; myeloid neoplasmsAR(Li et al., 2014; Yoshida and Ogawa, 2014; Malcovati et al., 2015; Verma et al., 2018)
GeneOMIM prevalent mutation sitesSpliceosome complexDiseaseInheritanceReferences
SNRPBVarious mutations in an alternatively spliced regulatory exonSmCerebro-costo-mandibular syndromeAD(Lynch et al. 2014; Bacrot et al. 2015; Tooley et al. 2016)
SNRPEc.1A>G (p.M1?); c.133G>A (p.G45S)SmHypotrichosis 11AD(Pasternack et al. 2013)
SF3B1Mutations clustered in exons 12 to 15; p.K700E; Other hotspots: p.E622; p.R625; p.H662; p.K666; p.I704; G742U2 snRNPMDS; CMML; AML; solid tumors(Papaemmanuil et al. 2011; Quesada et al. 2011; Wang et al. 2011; Harbour et al. 2013)
SF3B4None prevalent; various de novo mutations occur at several sitesU2 snRNPNager acrofacial dysostosisAD(Bernier et al. 2012; Petit et al. 2014)
EFTUD2Several either de novo 17q21.31 deletions encompassing EFTUD2 or de novo heterozygous EFTUD2 mutationsU5 snRNPMandibulofacial dysostosis type Guion-AlmeidaAD(Wieczorek et al. 2009; Lines et al. 2012)
PRPF6c.2185C>T (p.R729W)U5 snRNPRPAD(Tanackovic et al. 2011a)
PRPF8Various sites clustered within exon 42U5 snRNPRP; MDSAD(McKie et al. 2001; Towns et al. 2010; Maubaret et al. 2011; Kurtovic-Kozaric et al. 2015; Ruzickova and Stanek 2017)
SNRNP200c.2653C>G (p.Q885E)U5 snRNPRPAD(Zhao et al. 2006; Liu et al. 2012)
TXNL4AMost patients are compound heterozygous for a 34-bp deletion in the TXNL4A promoter (chr18:77,748,581-77,748,614del, GRCh37) and a truncating point mutation (e.g., c.131delT [p. Val44AlafsTer48] or another deletion (e.g., Ex3DEL)U5 snRNPBurn-McKeown syndromeAR(Wieczorek et al. 2014)
PRPF3Various (e.g., c.1482C>T [p.T494M]; c.1478C>T [p.P493S])U4/U6 snRNPRPAD(Chakarova et al. 2002; Tanackovic et al. 2011b)
PRPF4c.944C>T (p.P315L); c.-114_-97delU4/U6 snRNPRPAD(Chen et al. 2014)
PRPF31VariousU4/U6 snRNPRPAD(Vithana et al. 2001; Deery et al. 2002; Rivolta et al. 2006)
RNPC3Compound heterozygosity (p.P474T and p.R502*)U11/U12 snRNPIsolated growth hormone deficiency, type VAR(Argente et al., 2014)
RNU4ATACVariousU4atac snRNPLowry-Wood syndrome; Roifman syndrome; Microcephalic osteodysplastic primordial dwarfism type IAR(Edery et al., 2011; He et al., 2011; Merico et al., 2015; Scotti and Swanson, 2016)
PUF60VariousU2 snRNP; A complexVerheij syndromeAD(Dauber et al., 2013; Low et al., 2017)
U2AF1c.101G>A (p.S34F); c.101G>T (p.S34Y); c.470T>C (p.Q157R)U2 snRNP; A complexMDS(Graubert et al., 2011)
RBM10VariousRecruited at A complexTARP syndromeXLR(Johnston et al., 2010)
PQBP1VariousPRP19 complex; B complexRenpenning syndromeXLR(Kalscheuer et al., 2003)
CWC27VariousRecruited at Bact complexRP with or without skeletal anomaliesAR(Xu et al., 2017)
DHX16VariousRecruited at Bact complexNeuromuscular disease and ocular or auditory anomalies with or without seizuresAD(Paine et al., 2019)
PRCCReciprocal translocation between chromosomes X and 1, t(X;1)(p11.2;q21.2) creating a PRCC-TFE3 hybrid transcriptRecruited at Bact complexPapillary renal cell carcinoma(Sidhar et al., 1996)
RNF113AVariousRecruited at Bact complexNonphotosensitive trichothiodystrophy 5XLD(Corbett et al., 2015)
CXORF56c.159_160insTA (p.D54*)Recruited at C complexMental retardation, X-linked 107XL(Verkerk et al., 2018)
DDX41VariousRecruited at C complexSusceptibility to familial myeloproliferative/lymphoproliferative neoplasms (e.g., MDS and AML)AD(Polprasert et al., 2015)
EIF4A3Expanded 16-repeat allele (initial CACA-20-nt motif followed by 13 repeats of CGCA-20-nt, 1 CACA-20-nt, and 1 final CA-18-nt motif) in the 5′ UTREJC/mRNPRobin sequence with cleft mandible and limb anomaliesAR(Favaro et al., 2014)
RBM8A200-kb deletion on 1q21.1 plus an additional RBM8A mutation (site varies; e.g., c.-21G>A)EJC/mRNPThrombocytopenia-absent radius syndromeAR(Albers et al., 2012)
FUSVarioushnRNPALS(Reber et al., 2016)
HNRNPA1c.941A>T (p.D314V); c.940G>A (p.D314N); c.956A>G (p.N319S)hnRNPInclusion body myopathy with early-onset Paget disease without frontotemporal dementia 3; ALSAD(Kim et al., 2013)
SMN1VariousAll Sm snRNPsSpinal muscular atrophy; myeloid neoplasmsAR(Li et al., 2014; Yoshida and Ogawa, 2014; Malcovati et al., 2015; Verma et al., 2018)

AD autosomal dominant, ALS amyotrophic lateral sclerosis, AML acute myeloid leukemia, AR autosomal recessive, CMML, chronic myelomonocytic leukemia, EJC exon junction complex, hnRNP heterogeneous nuclear ribonucleoprotein, MDS myelodysplastic syndromes, mRNP messenger ribonucleoprotein, OMIM Online Mendelian Inheritance in Man®, RES retention and splicing, RP retinitis pigmentosa, XLD X-linked dominant, XLR X-linked recessive.

Close
This Feature Is Available To Subscribers Only

Sign In or Create an Account

Close

This PDF is available to Subscribers Only

View Article Abstract & Purchase Options

For full access to this pdf, sign in to an existing account, or purchase an annual subscription.

Close