Table 3.

Germline NOD2 mutations identified in IBD patients with CRC.

CodeAA ChangeSIFTPolyphenMutation TasterMutation AssessorCADD
UC2766SGRc.C2104T (p.R702W)DDNM24.1
UC2766SGRc.C2050T (p.R684W)DBNM23.2
UC3356SGRc.C2104T (p.R702W)DDNM24.1
UC537SGRc.A866G (p.Asn289S)TBDM0.03
CD4885SGRc.G2722C (p.Gly908R)DDDL31
CD4885SGRc.C2104T (p.R702W)DDNM24.1
CD4081SGRc.3019dupC (p.L1007Profs).....
UC5173SGRc.C2104T (p.R702W)DDNM24.1
UC3964SGRc.3019dupC (p.L1007Profs).....
UC5425SGRc.T743G (p.L248R)DDDM25.3
CodeAA ChangeSIFTPolyphenMutation TasterMutation AssessorCADD
UC2766SGRc.C2104T (p.R702W)DDNM24.1
UC2766SGRc.C2050T (p.R684W)DBNM23.2
UC3356SGRc.C2104T (p.R702W)DDNM24.1
UC537SGRc.A866G (p.Asn289S)TBDM0.03
CD4885SGRc.G2722C (p.Gly908R)DDDL31
CD4885SGRc.C2104T (p.R702W)DDNM24.1
CD4081SGRc.3019dupC (p.L1007Profs).....
UC5173SGRc.C2104T (p.R702W)DDNM24.1
UC3964SGRc.3019dupC (p.L1007Profs).....
UC5425SGRc.T743G (p.L248R)DDDM25.3

Three major variants in bold.

Abbreviations: nsSNP, nonsynonymous SNPs; VUS, variant of uncertain significance; AA change, amino acid change; CLINSIG, clinical significance. SIFT (sorting intolerant from tolerant): D, deleterious; T, tolerated. Polyphen (polymorphism phenotyping): D, probably damaging; P, possibly damaging; B, benign. CADD (combined annotation dependent depletion). Mutation Taster: A, disease causing (predicted as disease causing in ClinVar); D, disease causing; N, polymorphism; P, polymorphism-automatic (predicted as neutral in ClinVar). Mutation Assessor: H, high; M, medium; L, low; N, neutral.

Table 3.

Germline NOD2 mutations identified in IBD patients with CRC.

CodeAA ChangeSIFTPolyphenMutation TasterMutation AssessorCADD
UC2766SGRc.C2104T (p.R702W)DDNM24.1
UC2766SGRc.C2050T (p.R684W)DBNM23.2
UC3356SGRc.C2104T (p.R702W)DDNM24.1
UC537SGRc.A866G (p.Asn289S)TBDM0.03
CD4885SGRc.G2722C (p.Gly908R)DDDL31
CD4885SGRc.C2104T (p.R702W)DDNM24.1
CD4081SGRc.3019dupC (p.L1007Profs).....
UC5173SGRc.C2104T (p.R702W)DDNM24.1
UC3964SGRc.3019dupC (p.L1007Profs).....
UC5425SGRc.T743G (p.L248R)DDDM25.3
CodeAA ChangeSIFTPolyphenMutation TasterMutation AssessorCADD
UC2766SGRc.C2104T (p.R702W)DDNM24.1
UC2766SGRc.C2050T (p.R684W)DBNM23.2
UC3356SGRc.C2104T (p.R702W)DDNM24.1
UC537SGRc.A866G (p.Asn289S)TBDM0.03
CD4885SGRc.G2722C (p.Gly908R)DDDL31
CD4885SGRc.C2104T (p.R702W)DDNM24.1
CD4081SGRc.3019dupC (p.L1007Profs).....
UC5173SGRc.C2104T (p.R702W)DDNM24.1
UC3964SGRc.3019dupC (p.L1007Profs).....
UC5425SGRc.T743G (p.L248R)DDDM25.3

Three major variants in bold.

Abbreviations: nsSNP, nonsynonymous SNPs; VUS, variant of uncertain significance; AA change, amino acid change; CLINSIG, clinical significance. SIFT (sorting intolerant from tolerant): D, deleterious; T, tolerated. Polyphen (polymorphism phenotyping): D, probably damaging; P, possibly damaging; B, benign. CADD (combined annotation dependent depletion). Mutation Taster: A, disease causing (predicted as disease causing in ClinVar); D, disease causing; N, polymorphism; P, polymorphism-automatic (predicted as neutral in ClinVar). Mutation Assessor: H, high; M, medium; L, low; N, neutral.

Close
This Feature Is Available To Subscribers Only

Sign In or Create an Account

Close

This PDF is available to Subscribers Only

View Article Abstract & Purchase Options

For full access to this pdf, sign in to an existing account, or purchase an annual subscription.

Close