Table 4

The results of herb clustering based on SARS-CoV-2 auxiliary proteins

ProteinTop 10 herbsUnique drug set
orf3aGinkgo Folium, Common Macrocarpium Fruit, Modern Rose, Honeysuckle Flower, Forsythia Suspensa, Chrysanthemum, Rhizoma Dioscoreae Bulbiferae, Stigma Maydis, Herba Hyperici Japonici, Smilacis Chinae RhizomaGinkgo Folium, Common Macrocarpium Fruit, Modern Rose, Honeysuckle Flower, Forsythia Suspensa, Chrysanthemum, Rhizoma Dioscoreae Bulbiferae, Stigma Maydis, Herba Hyperici Japonici, Smilacis Chinae Rhizoma, Bletilla Striata, Arecae Pericarpium, Greater Calandine Herb, Garlic, Herba Solani Lyrati, Radix Physochlainae, Root of Garden Eggplant, Euphorbiae Pekinensis Radix, Cortex Erythrinae Seu Kalopanacis, Cyrtomium Rhizome, Stemonae Radix, Imperatae Rhizoma, Herbal Ephedra Root, Akebia Stem, Cynanchi Atrati Radix Et Rhizoma, Fruit of Tree-of-heaven Ailanthus, Beartiful Sweetgum Fruit, Cortex Periplocae, Kaki Calyx, Clematidis Radix Et Rhizoma, Hyperici Perforati Herba, Indigowoad Root, Ilex latifolia Thunb, Amur Corktree Bark, Platycladi Cacumen, Ginkgo Seed, Glycyrrhiza, Artemisiae Annuae Herba, Fritillariae Cirrhosae Bulbus, Curcumae Radix, Vigna umbellate, Radix Tinosporae, Aconiti Kusnezoffii Folium, Rhizome of Decumbent Corydalis, Polyporus, Radix Trichosanthis, Menispermi Rhizoma, Spina Date Seed, Spiderflower Seed
orf6Bletilla Striata, Arecae Pericarpium, Greater Calandine Herb, Garlic, Herba Solani Lyrati, Radix Physochlainae, Root of Garden Eggplant, Euphorbiae Pekinensis Radix, Cortex Erythrinae Seu Kalopanacis, Cyrtomium Rhizome
orf7aStemonae Radix, Imperatae Rhizoma, Herbal Ephedra Root, Akebia Stem, Cynanchi Atrati Radix Et Rhizoma, Fruit of Tree-of-heaven Ailanthus, Beartiful Sweetgum Fruit, Cortex Periplocae, Kaki Calyx, Clematidis Radix Et Rhizoma
orf8Hyperici Perforati Herba, Indigowoad Root, Ilex latifolia Thunb, Amur Corktree Bark, Platycladi Cacumen, Ginkgo Seed, Glycyrrhiza, Artemisiae Annuae Herba, Fritillariae Cirrhosae Bulbus, Curcumae Radix
orf10Vigna umbellate, Radix Tinosporae, Aconiti Kusnezoffii Folium, Rhizome of Decumbent Corydalis, Polyporus, Radix Trichosanthis, Menispermi Rhizoma, Spina Date Seed, Spiderflower Seed, Root of Garden Eggplant
ProteinTop 10 herbsUnique drug set
orf3aGinkgo Folium, Common Macrocarpium Fruit, Modern Rose, Honeysuckle Flower, Forsythia Suspensa, Chrysanthemum, Rhizoma Dioscoreae Bulbiferae, Stigma Maydis, Herba Hyperici Japonici, Smilacis Chinae RhizomaGinkgo Folium, Common Macrocarpium Fruit, Modern Rose, Honeysuckle Flower, Forsythia Suspensa, Chrysanthemum, Rhizoma Dioscoreae Bulbiferae, Stigma Maydis, Herba Hyperici Japonici, Smilacis Chinae Rhizoma, Bletilla Striata, Arecae Pericarpium, Greater Calandine Herb, Garlic, Herba Solani Lyrati, Radix Physochlainae, Root of Garden Eggplant, Euphorbiae Pekinensis Radix, Cortex Erythrinae Seu Kalopanacis, Cyrtomium Rhizome, Stemonae Radix, Imperatae Rhizoma, Herbal Ephedra Root, Akebia Stem, Cynanchi Atrati Radix Et Rhizoma, Fruit of Tree-of-heaven Ailanthus, Beartiful Sweetgum Fruit, Cortex Periplocae, Kaki Calyx, Clematidis Radix Et Rhizoma, Hyperici Perforati Herba, Indigowoad Root, Ilex latifolia Thunb, Amur Corktree Bark, Platycladi Cacumen, Ginkgo Seed, Glycyrrhiza, Artemisiae Annuae Herba, Fritillariae Cirrhosae Bulbus, Curcumae Radix, Vigna umbellate, Radix Tinosporae, Aconiti Kusnezoffii Folium, Rhizome of Decumbent Corydalis, Polyporus, Radix Trichosanthis, Menispermi Rhizoma, Spina Date Seed, Spiderflower Seed
orf6Bletilla Striata, Arecae Pericarpium, Greater Calandine Herb, Garlic, Herba Solani Lyrati, Radix Physochlainae, Root of Garden Eggplant, Euphorbiae Pekinensis Radix, Cortex Erythrinae Seu Kalopanacis, Cyrtomium Rhizome
orf7aStemonae Radix, Imperatae Rhizoma, Herbal Ephedra Root, Akebia Stem, Cynanchi Atrati Radix Et Rhizoma, Fruit of Tree-of-heaven Ailanthus, Beartiful Sweetgum Fruit, Cortex Periplocae, Kaki Calyx, Clematidis Radix Et Rhizoma
orf8Hyperici Perforati Herba, Indigowoad Root, Ilex latifolia Thunb, Amur Corktree Bark, Platycladi Cacumen, Ginkgo Seed, Glycyrrhiza, Artemisiae Annuae Herba, Fritillariae Cirrhosae Bulbus, Curcumae Radix
orf10Vigna umbellate, Radix Tinosporae, Aconiti Kusnezoffii Folium, Rhizome of Decumbent Corydalis, Polyporus, Radix Trichosanthis, Menispermi Rhizoma, Spina Date Seed, Spiderflower Seed, Root of Garden Eggplant
Table 4

The results of herb clustering based on SARS-CoV-2 auxiliary proteins

ProteinTop 10 herbsUnique drug set
orf3aGinkgo Folium, Common Macrocarpium Fruit, Modern Rose, Honeysuckle Flower, Forsythia Suspensa, Chrysanthemum, Rhizoma Dioscoreae Bulbiferae, Stigma Maydis, Herba Hyperici Japonici, Smilacis Chinae RhizomaGinkgo Folium, Common Macrocarpium Fruit, Modern Rose, Honeysuckle Flower, Forsythia Suspensa, Chrysanthemum, Rhizoma Dioscoreae Bulbiferae, Stigma Maydis, Herba Hyperici Japonici, Smilacis Chinae Rhizoma, Bletilla Striata, Arecae Pericarpium, Greater Calandine Herb, Garlic, Herba Solani Lyrati, Radix Physochlainae, Root of Garden Eggplant, Euphorbiae Pekinensis Radix, Cortex Erythrinae Seu Kalopanacis, Cyrtomium Rhizome, Stemonae Radix, Imperatae Rhizoma, Herbal Ephedra Root, Akebia Stem, Cynanchi Atrati Radix Et Rhizoma, Fruit of Tree-of-heaven Ailanthus, Beartiful Sweetgum Fruit, Cortex Periplocae, Kaki Calyx, Clematidis Radix Et Rhizoma, Hyperici Perforati Herba, Indigowoad Root, Ilex latifolia Thunb, Amur Corktree Bark, Platycladi Cacumen, Ginkgo Seed, Glycyrrhiza, Artemisiae Annuae Herba, Fritillariae Cirrhosae Bulbus, Curcumae Radix, Vigna umbellate, Radix Tinosporae, Aconiti Kusnezoffii Folium, Rhizome of Decumbent Corydalis, Polyporus, Radix Trichosanthis, Menispermi Rhizoma, Spina Date Seed, Spiderflower Seed
orf6Bletilla Striata, Arecae Pericarpium, Greater Calandine Herb, Garlic, Herba Solani Lyrati, Radix Physochlainae, Root of Garden Eggplant, Euphorbiae Pekinensis Radix, Cortex Erythrinae Seu Kalopanacis, Cyrtomium Rhizome
orf7aStemonae Radix, Imperatae Rhizoma, Herbal Ephedra Root, Akebia Stem, Cynanchi Atrati Radix Et Rhizoma, Fruit of Tree-of-heaven Ailanthus, Beartiful Sweetgum Fruit, Cortex Periplocae, Kaki Calyx, Clematidis Radix Et Rhizoma
orf8Hyperici Perforati Herba, Indigowoad Root, Ilex latifolia Thunb, Amur Corktree Bark, Platycladi Cacumen, Ginkgo Seed, Glycyrrhiza, Artemisiae Annuae Herba, Fritillariae Cirrhosae Bulbus, Curcumae Radix
orf10Vigna umbellate, Radix Tinosporae, Aconiti Kusnezoffii Folium, Rhizome of Decumbent Corydalis, Polyporus, Radix Trichosanthis, Menispermi Rhizoma, Spina Date Seed, Spiderflower Seed, Root of Garden Eggplant
ProteinTop 10 herbsUnique drug set
orf3aGinkgo Folium, Common Macrocarpium Fruit, Modern Rose, Honeysuckle Flower, Forsythia Suspensa, Chrysanthemum, Rhizoma Dioscoreae Bulbiferae, Stigma Maydis, Herba Hyperici Japonici, Smilacis Chinae RhizomaGinkgo Folium, Common Macrocarpium Fruit, Modern Rose, Honeysuckle Flower, Forsythia Suspensa, Chrysanthemum, Rhizoma Dioscoreae Bulbiferae, Stigma Maydis, Herba Hyperici Japonici, Smilacis Chinae Rhizoma, Bletilla Striata, Arecae Pericarpium, Greater Calandine Herb, Garlic, Herba Solani Lyrati, Radix Physochlainae, Root of Garden Eggplant, Euphorbiae Pekinensis Radix, Cortex Erythrinae Seu Kalopanacis, Cyrtomium Rhizome, Stemonae Radix, Imperatae Rhizoma, Herbal Ephedra Root, Akebia Stem, Cynanchi Atrati Radix Et Rhizoma, Fruit of Tree-of-heaven Ailanthus, Beartiful Sweetgum Fruit, Cortex Periplocae, Kaki Calyx, Clematidis Radix Et Rhizoma, Hyperici Perforati Herba, Indigowoad Root, Ilex latifolia Thunb, Amur Corktree Bark, Platycladi Cacumen, Ginkgo Seed, Glycyrrhiza, Artemisiae Annuae Herba, Fritillariae Cirrhosae Bulbus, Curcumae Radix, Vigna umbellate, Radix Tinosporae, Aconiti Kusnezoffii Folium, Rhizome of Decumbent Corydalis, Polyporus, Radix Trichosanthis, Menispermi Rhizoma, Spina Date Seed, Spiderflower Seed
orf6Bletilla Striata, Arecae Pericarpium, Greater Calandine Herb, Garlic, Herba Solani Lyrati, Radix Physochlainae, Root of Garden Eggplant, Euphorbiae Pekinensis Radix, Cortex Erythrinae Seu Kalopanacis, Cyrtomium Rhizome
orf7aStemonae Radix, Imperatae Rhizoma, Herbal Ephedra Root, Akebia Stem, Cynanchi Atrati Radix Et Rhizoma, Fruit of Tree-of-heaven Ailanthus, Beartiful Sweetgum Fruit, Cortex Periplocae, Kaki Calyx, Clematidis Radix Et Rhizoma
orf8Hyperici Perforati Herba, Indigowoad Root, Ilex latifolia Thunb, Amur Corktree Bark, Platycladi Cacumen, Ginkgo Seed, Glycyrrhiza, Artemisiae Annuae Herba, Fritillariae Cirrhosae Bulbus, Curcumae Radix
orf10Vigna umbellate, Radix Tinosporae, Aconiti Kusnezoffii Folium, Rhizome of Decumbent Corydalis, Polyporus, Radix Trichosanthis, Menispermi Rhizoma, Spina Date Seed, Spiderflower Seed, Root of Garden Eggplant
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