| Program . | Prophages Identifieda . | False positives . | Prophages missed . | Prophages split . |
|---|---|---|---|---|
| PHASTER | 45 | 8 | 0 | 10 |
| VirSorter2+ CheckV | 43 | 15 | 0 | 1 |
| PhageBoost | 63 | 17 | 3 | 14 |
| DEPhT (fast mode) | 29 | 2 | 0 | 0 |
| DEPhT (normal mode) | 27 | 0 | 0 | 0 |
| Program . | Prophages Identifieda . | False positives . | Prophages missed . | Prophages split . |
|---|---|---|---|---|
| PHASTER | 45 | 8 | 0 | 10 |
| VirSorter2+ CheckV | 43 | 15 | 0 | 1 |
| PhageBoost | 63 | 17 | 3 | 14 |
| DEPhT (fast mode) | 29 | 2 | 0 | 0 |
| DEPhT (normal mode) | 27 | 0 | 0 | 0 |
aThe total number of prophage or prophage segments reported for each program using a test-set of 10 completely sequenced M. abscessus genomes. A total of 25 prophages was previously reported for these genomes, and the two additional prophages discovered with DEPhT in the standard mode were checked by manual inspection, and were clearly missed in the prior analysis.
| Program . | Prophages Identifieda . | False positives . | Prophages missed . | Prophages split . |
|---|---|---|---|---|
| PHASTER | 45 | 8 | 0 | 10 |
| VirSorter2+ CheckV | 43 | 15 | 0 | 1 |
| PhageBoost | 63 | 17 | 3 | 14 |
| DEPhT (fast mode) | 29 | 2 | 0 | 0 |
| DEPhT (normal mode) | 27 | 0 | 0 | 0 |
| Program . | Prophages Identifieda . | False positives . | Prophages missed . | Prophages split . |
|---|---|---|---|---|
| PHASTER | 45 | 8 | 0 | 10 |
| VirSorter2+ CheckV | 43 | 15 | 0 | 1 |
| PhageBoost | 63 | 17 | 3 | 14 |
| DEPhT (fast mode) | 29 | 2 | 0 | 0 |
| DEPhT (normal mode) | 27 | 0 | 0 | 0 |
aThe total number of prophage or prophage segments reported for each program using a test-set of 10 completely sequenced M. abscessus genomes. A total of 25 prophages was previously reported for these genomes, and the two additional prophages discovered with DEPhT in the standard mode were checked by manual inspection, and were clearly missed in the prior analysis.
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