Table 2. Open in new tab Tryptic...

Table 2.

Tryptic peptides detected by LC-MS/MS analysis of in-gel trypsin-digests of a fluorescent peptide-protein complex band (Fig. 2k)

Protein name	UniProt accession	Gene name	Sequence	MH+	PEP	Charge	m/z
β-subunit of ATP synthase^a	P10719	Atp5b^b	LVLEVAQHLGESTVR	1650.92044	9.164E-07	3	550.97833
			IPVGPETLGR	1038.59465	0.00796	2	519.80096
			IGLFGGAGVGK	975.56249	0.0002068	2	488.28387
			TVLIMELINNVAK	1457.84001	0.00003735	2	729.42365
			VALVYGQMNEPPGAR	1601.81450	0.01388	2	801.41089
			VALTGLTVAEYFR	1439.79094	2.572E-08	2	720.39929
			FTQAGSEVSALLGR	1435.75481	5.318E-07	2	718.38104
			IMDPNIVGSEHYDVAR	1815.87174	0.00001868	3	605.95959
			IM*DPNIVGSEHYDVAR	1831.86399	0.006308	3	611.29211

Protein name	UniProt accession	Gene name	Sequence	MH+	PEP	Charge	m/z
β-subunit of ATP synthase^a	P10719	Atp5b^b	LVLEVAQHLGESTVR	1650.92044	9.164E-07	3	550.97833
			IPVGPETLGR	1038.59465	0.00796	2	519.80096
			IGLFGGAGVGK	975.56249	0.0002068	2	488.28387
			TVLIMELINNVAK	1457.84001	0.00003735	2	729.42365
			VALVYGQMNEPPGAR	1601.81450	0.01388	2	801.41089
			VALTGLTVAEYFR	1439.79094	2.572E-08	2	720.39929
			FTQAGSEVSALLGR	1435.75481	5.318E-07	2	718.38104
			IMDPNIVGSEHYDVAR	1815.87174	0.00001868	3	605.95959
			IM*DPNIVGSEHYDVAR	1831.86399	0.006308	3	611.29211

Each peptide was identified with a false discovery rate of 1%. Abbreviations: M*, oxidized methionine residue; PEP, posterior error probabilities.

^aThe protein name registered in the UniProt database is ATP synthase F1 subunit beta or ATP synthase subunit beta, mitochondrial.

^bThe gene name registered in the UniProt database is Atp5f1b or Atp5b.