Table 1.
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Testing datasets. We utilized datasets from the Affymetrix microarray platform (hgu133a and HTA array) and RNA-Seq data

IDDatasetnTNBCPlatform
AGSE106977119119Affymetrix HTA 2.0
BGSE25055310116Affymetrix U133A Array
CGSE2605519860Affymetrix U133A Array
DGSE3264611526Affymetrix U133A Array
EBrighTNess482482RNASeq
FCALGB 40603389241RNASeq
GBEAUTY126a42RNASeq
IDDatasetnTNBCPlatform
AGSE106977119119Affymetrix HTA 2.0
BGSE25055310116Affymetrix U133A Array
CGSE2605519860Affymetrix U133A Array
DGSE3264611526Affymetrix U133A Array
EBrighTNess482482RNASeq
FCALGB 40603389241RNASeq
GBEAUTY126a42RNASeq
a

Additional RNASeq samples were available, whereas the original manuscript reported samples having both RNASeq and DNASeq data.

Table 1.
Open in new tab

Testing datasets. We utilized datasets from the Affymetrix microarray platform (hgu133a and HTA array) and RNA-Seq data

IDDatasetnTNBCPlatform
AGSE106977119119Affymetrix HTA 2.0
BGSE25055310116Affymetrix U133A Array
CGSE2605519860Affymetrix U133A Array
DGSE3264611526Affymetrix U133A Array
EBrighTNess482482RNASeq
FCALGB 40603389241RNASeq
GBEAUTY126a42RNASeq
IDDatasetnTNBCPlatform
AGSE106977119119Affymetrix HTA 2.0
BGSE25055310116Affymetrix U133A Array
CGSE2605519860Affymetrix U133A Array
DGSE3264611526Affymetrix U133A Array
EBrighTNess482482RNASeq
FCALGB 40603389241RNASeq
GBEAUTY126a42RNASeq
a

Additional RNASeq samples were available, whereas the original manuscript reported samples having both RNASeq and DNASeq data.

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