Table 1. Open in new tab Size of Genome...

Chromosome	D. albomicans	D. nasuta	D. kepulauana	D. s. albostrigata	D. s. bilimbata	D. s. sulfurigaster	D. pallidifrons
Muller A	33,597,023	33,189,490	33,291,615	33,386,403	33,007,321	33,493,557	32,839,655
Muller B	30,469,903	28,690,150	31,604,248	30,983,057	30,102,783	29,954,194	29,503,240
Muller CD	55,495,487	55,283,848	55,283,860	56,209,854	54,959,191	55,186,638	55,584,481
Muller E	35,291,776	33,885,645	34,564,094	37,627,869	36,279,119	35,818,991	37,973,042
Muller F	1,839,965	2,061,818	1,552,407	2,495,194	2,423,155	2,918,623	3,067,770
Chromosome total	156,694,154	153,110,951	156,296,224	160,702,377	156,771,569	157,372,003	158,968,188
Assembly total	167,541,436	171,781,232	163,769,021	168,284,230	164,595,183	168,070,293	164,659,715
N50	35,291,776	33,885,645	34,564,094	37,627,869	36,279,119	35,818,991	37,973,042
Number of Scaffolds^a	220	282	77	95	201	123	104
BUSCO^b	99.62%	99.16%	99.72%	98.50%	99.72%	98.87%	99.62%
Repeat content^c	20.71%	23.26%	18.75%	21.27%	19.79%	19.60%	20.10%
Annotated genes	12,395	12,492	12,594	12,595	12,432	12,718	12,362

Chromosome

D. albomicans

D. nasuta

D. kepulauana

D. s. albostrigata

D. s. bilimbata

D. s. sulfurigaster

D. pallidifrons

size (bp)

Muller A

33,597,023

33,189,490

33,291,615

33,386,403

33,007,321

33,493,557

32,839,655

Muller B

30,469,903

28,690,150

31,604,248

30,983,057

30,102,783

29,954,194

29,503,240

Muller CD

55,495,487

55,283,848

55,283,860

56,209,854

54,959,191

55,186,638

55,584,481

Muller E

35,291,776

33,885,645

34,564,094

37,627,869

36,279,119

35,818,991

37,973,042

Muller F

1,839,965

2,061,818

1,552,407

2,495,194

2,423,155

2,918,623

3,067,770

Chromosome total

156,694,154

153,110,951

156,296,224

160,702,377

156,771,569

157,372,003

158,968,188

Assembly total

167,541,436

171,781,232

163,769,021

168,284,230

164,595,183

168,070,293

164,659,715

N50

35,291,776

33,885,645

34,564,094

37,627,869

36,279,119

35,818,991

37,973,042

Number of Scaffolds^a

220

282

201

123

104

BUSCO^b

99.62%

99.16%

99.72%

98.50%

99.72%

98.87%

99.62%

Repeat content^c

20.71%

23.26%

18.75%

21.27%

19.79%

19.60%

20.10%

Annotated genes

12,395

12,492

12,594

12,595

12,432

12,718

12,362

Chromosome	D. albomicans	D. nasuta	D. kepulauana	D. s. albostrigata	D. s. bilimbata	D. s. sulfurigaster	D. pallidifrons
Muller A	33,597,023	33,189,490	33,291,615	33,386,403	33,007,321	33,493,557	32,839,655
Muller B	30,469,903	28,690,150	31,604,248	30,983,057	30,102,783	29,954,194	29,503,240
Muller CD	55,495,487	55,283,848	55,283,860	56,209,854	54,959,191	55,186,638	55,584,481
Muller E	35,291,776	33,885,645	34,564,094	37,627,869	36,279,119	35,818,991	37,973,042
Muller F	1,839,965	2,061,818	1,552,407	2,495,194	2,423,155	2,918,623	3,067,770
Chromosome total	156,694,154	153,110,951	156,296,224	160,702,377	156,771,569	157,372,003	158,968,188
Assembly total	167,541,436	171,781,232	163,769,021	168,284,230	164,595,183	168,070,293	164,659,715
N50	35,291,776	33,885,645	34,564,094	37,627,869	36,279,119	35,818,991	37,973,042
Number of Scaffolds^a	220	282	77	95	201	123	104
BUSCO^b	99.62%	99.16%	99.72%	98.50%	99.72%	98.87%	99.62%
Repeat content^c	20.71%	23.26%	18.75%	21.27%	19.79%	19.60%	20.10%
Annotated genes	12,395	12,492	12,594	12,595	12,432	12,718	12,362

Table 1.

Open in new tab

Size of Genome Assemblies (and their Chromosomes) for Each Species and their Associated Summary Statistics.

Chromosome	D. albomicans	D. nasuta	D. kepulauana	D. s. albostrigata	D. s. bilimbata	D. s. sulfurigaster	D. pallidifrons
Chromosome	size (bp)	size (bp)	size (bp)	size (bp)	size (bp)	size (bp)	size (bp)
Muller A	33,597,023	33,189,490	33,291,615	33,386,403	33,007,321	33,493,557	32,839,655
Muller B	30,469,903	28,690,150	31,604,248	30,983,057	30,102,783	29,954,194	29,503,240
Muller CD	55,495,487	55,283,848	55,283,860	56,209,854	54,959,191	55,186,638	55,584,481
Muller E	35,291,776	33,885,645	34,564,094	37,627,869	36,279,119	35,818,991	37,973,042
Muller F	1,839,965	2,061,818	1,552,407	2,495,194	2,423,155	2,918,623	3,067,770
Chromosome total	156,694,154	153,110,951	156,296,224	160,702,377	156,771,569	157,372,003	158,968,188
Assembly total	167,541,436	171,781,232	163,769,021	168,284,230	164,595,183	168,070,293	164,659,715
N50	35,291,776	33,885,645	34,564,094	37,627,869	36,279,119	35,818,991	37,973,042
Number of Scaffolds^a	220	282	77	95	201	123	104
BUSCO^b	99.62%	99.16%	99.72%	98.50%	99.72%	98.87%	99.62%
Repeat content^c	20.71%	23.26%	18.75%	21.27%	19.79%	19.60%	20.10%
Annotated genes	12,395	12,492	12,594	12,595	12,432	12,718	12,362

Chromosome	D. albomicans	D. nasuta	D. kepulauana	D. s. albostrigata	D. s. bilimbata	D. s. sulfurigaster	D. pallidifrons
Chromosome	size (bp)	size (bp)	size (bp)	size (bp)	size (bp)	size (bp)	size (bp)
Muller A	33,597,023	33,189,490	33,291,615	33,386,403	33,007,321	33,493,557	32,839,655
Muller B	30,469,903	28,690,150	31,604,248	30,983,057	30,102,783	29,954,194	29,503,240
Muller CD	55,495,487	55,283,848	55,283,860	56,209,854	54,959,191	55,186,638	55,584,481
Muller E	35,291,776	33,885,645	34,564,094	37,627,869	36,279,119	35,818,991	37,973,042
Muller F	1,839,965	2,061,818	1,552,407	2,495,194	2,423,155	2,918,623	3,067,770
Chromosome total	156,694,154	153,110,951	156,296,224	160,702,377	156,771,569	157,372,003	158,968,188
Assembly total	167,541,436	171,781,232	163,769,021	168,284,230	164,595,183	168,070,293	164,659,715
N50	35,291,776	33,885,645	34,564,094	37,627,869	36,279,119	35,818,991	37,973,042
Number of Scaffolds^a	220	282	77	95	201	123	104
BUSCO^b	99.62%	99.16%	99.72%	98.50%	99.72%	98.87%	99.62%
Repeat content^c	20.71%	23.26%	18.75%	21.27%	19.79%	19.60%	20.10%
Annotated genes	12,395	12,492	12,594	12,595	12,432	12,718	12,362

See supplementary figs. S1–S7, Supplementary Material online for Hi-C scaffolding of the chromosome arms in each species.

See supplementary table S2, Supplementary Material online for detailed BUSCO statistics.

See supplementary table S3, Supplementary Material online for repeat content and masking details.

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