Summary of Heteroplasmic Mutations for 1804 Clones from D. pulex, D. pulicaria, and D. obtusa.
Population ID . | Sample size . | Heteroplasmic clone . | Heteroplasmic sites . | Minor allele frequencies . |
---|---|---|---|---|
US D. pulex | ||||
BUS | 88 | 59 (0.67) | 2.75 [0.25] | 0.116 [0.010] |
CHQ | 93 | 56 (0.60) | 1.95 [0.29] | 0.076 [0.011] |
EB | 77 | 29 (0.38) | 8.86 [2.33] | 0.068 [0.016] |
KAP | 79 | 65 (0.82) | 2.80 [0.17] | 0.067 [0.005] |
LPA | 87 | 59 (0.68) | 4.29 [1.38] | 0.078 [0.009] |
LPB | 84 | 56 (0.67) | 7.54 [2.73] | 0.085 [0.008] |
NFL | 89 | 63 (0.71) | 2.91 [0.72] | 0.094 [0.012] |
PA | 440 | 280 (0.64) | 2.78 [0.26] | 0.073 [0.004] |
POV | 64 | 47 (0.73) | 6.70 [1.77] | 0.073 [0.010] |
TEX | 66 | 50 (0.76) | 12.18 [2.91] | 0.072 [0.009] |
Asex | 36 | 33 (0.92) | 21.55 [10.86] | 0.053 [0.007] |
OA (Oregon) | 66 | 48 (0.73) | 10.56 [5.09] | 0.112 [0.012] |
SH (Oregon) | 90 | 66 (0.73) | 2.30 [0.19] | 0.087 [0.010] |
Non-US D. pulex | ||||
BEL (Europe) | 30 | 29 (0.97) | 1.38 [0.11] | 0.073 [0.009] |
SZH (Asia) | 42 | 42 (1.00) | 22.23 [0.75] | 0.177 [0.004] |
D. pulicaria | ||||
BRA | 79 | 73 (0.92) | 2.18 [0.13] | 0.033 [0.002] |
CLO | 60 | 60 (1.00) | 13.37 [1.38] | 0.046 [0.003] |
TF | 62 | 61 (0.98) | 9.77 [0.90] | 0.065 [0.010] |
D. obtusa | ||||
EBG | 67 | 66 (0.99) | 27.03 [2.31] | 0.054 [0.004] |
PYR | 43 | 43 (1.00) | 28.74 [3.96] | 0.055 [0.005] |
RAP | 62 | 62 (1.00) | 302.00 [34.40] | 0.049 [0.003] |
Population ID . | Sample size . | Heteroplasmic clone . | Heteroplasmic sites . | Minor allele frequencies . |
---|---|---|---|---|
US D. pulex | ||||
BUS | 88 | 59 (0.67) | 2.75 [0.25] | 0.116 [0.010] |
CHQ | 93 | 56 (0.60) | 1.95 [0.29] | 0.076 [0.011] |
EB | 77 | 29 (0.38) | 8.86 [2.33] | 0.068 [0.016] |
KAP | 79 | 65 (0.82) | 2.80 [0.17] | 0.067 [0.005] |
LPA | 87 | 59 (0.68) | 4.29 [1.38] | 0.078 [0.009] |
LPB | 84 | 56 (0.67) | 7.54 [2.73] | 0.085 [0.008] |
NFL | 89 | 63 (0.71) | 2.91 [0.72] | 0.094 [0.012] |
PA | 440 | 280 (0.64) | 2.78 [0.26] | 0.073 [0.004] |
POV | 64 | 47 (0.73) | 6.70 [1.77] | 0.073 [0.010] |
TEX | 66 | 50 (0.76) | 12.18 [2.91] | 0.072 [0.009] |
Asex | 36 | 33 (0.92) | 21.55 [10.86] | 0.053 [0.007] |
OA (Oregon) | 66 | 48 (0.73) | 10.56 [5.09] | 0.112 [0.012] |
SH (Oregon) | 90 | 66 (0.73) | 2.30 [0.19] | 0.087 [0.010] |
Non-US D. pulex | ||||
BEL (Europe) | 30 | 29 (0.97) | 1.38 [0.11] | 0.073 [0.009] |
SZH (Asia) | 42 | 42 (1.00) | 22.23 [0.75] | 0.177 [0.004] |
D. pulicaria | ||||
BRA | 79 | 73 (0.92) | 2.18 [0.13] | 0.033 [0.002] |
CLO | 60 | 60 (1.00) | 13.37 [1.38] | 0.046 [0.003] |
TF | 62 | 61 (0.98) | 9.77 [0.90] | 0.065 [0.010] |
D. obtusa | ||||
EBG | 67 | 66 (0.99) | 27.03 [2.31] | 0.054 [0.004] |
PYR | 43 | 43 (1.00) | 28.74 [3.96] | 0.055 [0.005] |
RAP | 62 | 62 (1.00) | 302.00 [34.40] | 0.049 [0.003] |
Numbers within parentheses and brackets are fractions and standard errors. Mean minor-allele frequencies are calculated within each heteroplasmic clone and then averaged across all such clones.
Summary of Heteroplasmic Mutations for 1804 Clones from D. pulex, D. pulicaria, and D. obtusa.
Population ID . | Sample size . | Heteroplasmic clone . | Heteroplasmic sites . | Minor allele frequencies . |
---|---|---|---|---|
US D. pulex | ||||
BUS | 88 | 59 (0.67) | 2.75 [0.25] | 0.116 [0.010] |
CHQ | 93 | 56 (0.60) | 1.95 [0.29] | 0.076 [0.011] |
EB | 77 | 29 (0.38) | 8.86 [2.33] | 0.068 [0.016] |
KAP | 79 | 65 (0.82) | 2.80 [0.17] | 0.067 [0.005] |
LPA | 87 | 59 (0.68) | 4.29 [1.38] | 0.078 [0.009] |
LPB | 84 | 56 (0.67) | 7.54 [2.73] | 0.085 [0.008] |
NFL | 89 | 63 (0.71) | 2.91 [0.72] | 0.094 [0.012] |
PA | 440 | 280 (0.64) | 2.78 [0.26] | 0.073 [0.004] |
POV | 64 | 47 (0.73) | 6.70 [1.77] | 0.073 [0.010] |
TEX | 66 | 50 (0.76) | 12.18 [2.91] | 0.072 [0.009] |
Asex | 36 | 33 (0.92) | 21.55 [10.86] | 0.053 [0.007] |
OA (Oregon) | 66 | 48 (0.73) | 10.56 [5.09] | 0.112 [0.012] |
SH (Oregon) | 90 | 66 (0.73) | 2.30 [0.19] | 0.087 [0.010] |
Non-US D. pulex | ||||
BEL (Europe) | 30 | 29 (0.97) | 1.38 [0.11] | 0.073 [0.009] |
SZH (Asia) | 42 | 42 (1.00) | 22.23 [0.75] | 0.177 [0.004] |
D. pulicaria | ||||
BRA | 79 | 73 (0.92) | 2.18 [0.13] | 0.033 [0.002] |
CLO | 60 | 60 (1.00) | 13.37 [1.38] | 0.046 [0.003] |
TF | 62 | 61 (0.98) | 9.77 [0.90] | 0.065 [0.010] |
D. obtusa | ||||
EBG | 67 | 66 (0.99) | 27.03 [2.31] | 0.054 [0.004] |
PYR | 43 | 43 (1.00) | 28.74 [3.96] | 0.055 [0.005] |
RAP | 62 | 62 (1.00) | 302.00 [34.40] | 0.049 [0.003] |
Population ID . | Sample size . | Heteroplasmic clone . | Heteroplasmic sites . | Minor allele frequencies . |
---|---|---|---|---|
US D. pulex | ||||
BUS | 88 | 59 (0.67) | 2.75 [0.25] | 0.116 [0.010] |
CHQ | 93 | 56 (0.60) | 1.95 [0.29] | 0.076 [0.011] |
EB | 77 | 29 (0.38) | 8.86 [2.33] | 0.068 [0.016] |
KAP | 79 | 65 (0.82) | 2.80 [0.17] | 0.067 [0.005] |
LPA | 87 | 59 (0.68) | 4.29 [1.38] | 0.078 [0.009] |
LPB | 84 | 56 (0.67) | 7.54 [2.73] | 0.085 [0.008] |
NFL | 89 | 63 (0.71) | 2.91 [0.72] | 0.094 [0.012] |
PA | 440 | 280 (0.64) | 2.78 [0.26] | 0.073 [0.004] |
POV | 64 | 47 (0.73) | 6.70 [1.77] | 0.073 [0.010] |
TEX | 66 | 50 (0.76) | 12.18 [2.91] | 0.072 [0.009] |
Asex | 36 | 33 (0.92) | 21.55 [10.86] | 0.053 [0.007] |
OA (Oregon) | 66 | 48 (0.73) | 10.56 [5.09] | 0.112 [0.012] |
SH (Oregon) | 90 | 66 (0.73) | 2.30 [0.19] | 0.087 [0.010] |
Non-US D. pulex | ||||
BEL (Europe) | 30 | 29 (0.97) | 1.38 [0.11] | 0.073 [0.009] |
SZH (Asia) | 42 | 42 (1.00) | 22.23 [0.75] | 0.177 [0.004] |
D. pulicaria | ||||
BRA | 79 | 73 (0.92) | 2.18 [0.13] | 0.033 [0.002] |
CLO | 60 | 60 (1.00) | 13.37 [1.38] | 0.046 [0.003] |
TF | 62 | 61 (0.98) | 9.77 [0.90] | 0.065 [0.010] |
D. obtusa | ||||
EBG | 67 | 66 (0.99) | 27.03 [2.31] | 0.054 [0.004] |
PYR | 43 | 43 (1.00) | 28.74 [3.96] | 0.055 [0.005] |
RAP | 62 | 62 (1.00) | 302.00 [34.40] | 0.049 [0.003] |
Numbers within parentheses and brackets are fractions and standard errors. Mean minor-allele frequencies are calculated within each heteroplasmic clone and then averaged across all such clones.
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