Table 3. Open in new tab Number of genes...

Family	cis	trans	cis + trans	cis × trans	Compensatory	Ambiguous	Conserved
415 (S. purpurea × S. miyabeana)
415-018	152	210	21	34	36	1,151	13,692
415-020	412	123	32	36	44	1,084	13,447
415-023	384	105	34	35	28	1,084	13,984
415-031	316	119	29	32	30	1,109	14,004
415-038	328	109	29	29	20	1,089	13,802
415-054	381	122	35	32	31	1,049	13,839
415-073	354	116	23	41	32	1,097	14,025
415-074	288	76	24	22	19	1,201	12,841
415-082	359	91	27	25	28	1,125	13,924
415-257	329	95	17	22	22	1,131	13,896
Mean	330	117	27	31	29	1,112	13,745
423 (S. viminalis × S. miyabeana)
423-004	252	105	26	28	29	1,224	15,071
423-034	317	108	14	48	50	1,219	15,116
423-043	306	103	11	33	45	1,248	15,112
423-048	178	94	10	14	18	1,284	15,472
423-051	316	117	16	38	59	1,225	15,051
423-063	292	124	17	24	30	1,218	15,096
423-066	187	84	11	24	26	1,351	14,519
423-067	283	99	16	33	45	1,238	15,094
423-070	252	113	20	36	56	1,237	15,199
423-072	274	85	13	35	43	1,261	15,216
Mean	266	103	15	31	40	1,251	15,095
430 (S. miyabeana × S. viminalis)
430-004	295	111	21	47	63	1,095	14,797
430-005	203	77	10	32	37	1,110	15,386
430-006	219	115	13	27	31	1,095	15,298
430-016	245	117	24	34	47	1,086	15,501
430-018	252	95	14	42	62	1,118	15,210
430-025	180	79	12	16	30	1,182	15,615
430-031	174	105	5	22	26	1,171	15,366
430-033	265	107	14	47	79	1,126	14,884
430-034	206	94	15	19	40	1,126	15,301
430-035	144	96	10	17	24	1,187	14,399
Mean	218	100	14	30	44	1,130	15,176

Family

cis

trans

cis + trans

cis × trans

Compensatory

Ambiguous

Conserved

415 (S. purpurea × S. miyabeana)

415-018

152

210

1,151

13,692

415-020

412

123

1,084

13,447

415-023

384

105

1,084

13,984

415-031

316

119

1,109

14,004

415-038

328

109

1,089

13,802

415-054

381

122

1,049

13,839

415-073

354

116

1,097

14,025

415-074

288

1,201

12,841

415-082

359

1,125

13,924

415-257

329

1,131

13,896

Mean

330

117

1,112

13,745

423 (S. viminalis × S. miyabeana)

423-004

252

105

1,224

15,071

423-034

317

108

1,219

15,116

423-043

306

103

1,248

15,112

423-048

178

1,284

15,472

423-051

316

117

1,225

15,051

423-063

292

124

1,218

15,096

423-066

187

1,351

14,519

423-067

283

1,238

15,094

423-070

252

113

1,237

15,199

423-072

274

1,261

15,216

Mean

266

103

1,251

15,095

430 (S. miyabeana × S. viminalis)

430-004

295

111

1,095

14,797

430-005

203

1,110

15,386

430-006

219

115

1,095

15,298

430-016

245

117

1,086

15,501

430-018

252

1,118

15,210

430-025

180

1,182

15,615

430-031

174

105

1,171

15,366

430-033

265

107

1,126

14,884

430-034

206

1,126

15,301

430-035

144

1,187

14,399

Mean

218

100

1,130

15,176

Family	cis	trans	cis + trans	cis × trans	Compensatory	Ambiguous	Conserved
415 (S. purpurea × S. miyabeana)
415-018	152	210	21	34	36	1,151	13,692
415-020	412	123	32	36	44	1,084	13,447
415-023	384	105	34	35	28	1,084	13,984
415-031	316	119	29	32	30	1,109	14,004
415-038	328	109	29	29	20	1,089	13,802
415-054	381	122	35	32	31	1,049	13,839
415-073	354	116	23	41	32	1,097	14,025
415-074	288	76	24	22	19	1,201	12,841
415-082	359	91	27	25	28	1,125	13,924
415-257	329	95	17	22	22	1,131	13,896
Mean	330	117	27	31	29	1,112	13,745
423 (S. viminalis × S. miyabeana)
423-004	252	105	26	28	29	1,224	15,071
423-034	317	108	14	48	50	1,219	15,116
423-043	306	103	11	33	45	1,248	15,112
423-048	178	94	10	14	18	1,284	15,472
423-051	316	117	16	38	59	1,225	15,051
423-063	292	124	17	24	30	1,218	15,096
423-066	187	84	11	24	26	1,351	14,519
423-067	283	99	16	33	45	1,238	15,094
423-070	252	113	20	36	56	1,237	15,199
423-072	274	85	13	35	43	1,261	15,216
Mean	266	103	15	31	40	1,251	15,095
430 (S. miyabeana × S. viminalis)
430-004	295	111	21	47	63	1,095	14,797
430-005	203	77	10	32	37	1,110	15,386
430-006	219	115	13	27	31	1,095	15,298
430-016	245	117	24	34	47	1,086	15,501
430-018	252	95	14	42	62	1,118	15,210
430-025	180	79	12	16	30	1,182	15,615
430-031	174	105	5	22	26	1,171	15,366
430-033	265	107	14	47	79	1,126	14,884
430-034	206	94	15	19	40	1,126	15,301
430-035	144	96	10	17	24	1,187	14,399
Mean	218	100	14	30	44	1,130	15,176

Table 3.

Open in new tab

Number of genes assigned to regulatory divergence classifications (FDR = 0.005) in triploid F₁ individuals and their means by family.

Family	cis	trans	cis + trans	cis × trans	Compensatory	Ambiguous	Conserved
415 (S. purpurea × S. miyabeana)
415-018	152	210	21	34	36	1,151	13,692
415-020	412	123	32	36	44	1,084	13,447
415-023	384	105	34	35	28	1,084	13,984
415-031	316	119	29	32	30	1,109	14,004
415-038	328	109	29	29	20	1,089	13,802
415-054	381	122	35	32	31	1,049	13,839
415-073	354	116	23	41	32	1,097	14,025
415-074	288	76	24	22	19	1,201	12,841
415-082	359	91	27	25	28	1,125	13,924
415-257	329	95	17	22	22	1,131	13,896
Mean	330	117	27	31	29	1,112	13,745
423 (S. viminalis × S. miyabeana)
423-004	252	105	26	28	29	1,224	15,071
423-034	317	108	14	48	50	1,219	15,116
423-043	306	103	11	33	45	1,248	15,112
423-048	178	94	10	14	18	1,284	15,472
423-051	316	117	16	38	59	1,225	15,051
423-063	292	124	17	24	30	1,218	15,096
423-066	187	84	11	24	26	1,351	14,519
423-067	283	99	16	33	45	1,238	15,094
423-070	252	113	20	36	56	1,237	15,199
423-072	274	85	13	35	43	1,261	15,216
Mean	266	103	15	31	40	1,251	15,095
430 (S. miyabeana × S. viminalis)
430-004	295	111	21	47	63	1,095	14,797
430-005	203	77	10	32	37	1,110	15,386
430-006	219	115	13	27	31	1,095	15,298
430-016	245	117	24	34	47	1,086	15,501
430-018	252	95	14	42	62	1,118	15,210
430-025	180	79	12	16	30	1,182	15,615
430-031	174	105	5	22	26	1,171	15,366
430-033	265	107	14	47	79	1,126	14,884
430-034	206	94	15	19	40	1,126	15,301
430-035	144	96	10	17	24	1,187	14,399
Mean	218	100	14	30	44	1,130	15,176

Family	cis	trans	cis + trans	cis × trans	Compensatory	Ambiguous	Conserved
415 (S. purpurea × S. miyabeana)
415-018	152	210	21	34	36	1,151	13,692
415-020	412	123	32	36	44	1,084	13,447
415-023	384	105	34	35	28	1,084	13,984
415-031	316	119	29	32	30	1,109	14,004
415-038	328	109	29	29	20	1,089	13,802
415-054	381	122	35	32	31	1,049	13,839
415-073	354	116	23	41	32	1,097	14,025
415-074	288	76	24	22	19	1,201	12,841
415-082	359	91	27	25	28	1,125	13,924
415-257	329	95	17	22	22	1,131	13,896
Mean	330	117	27	31	29	1,112	13,745
423 (S. viminalis × S. miyabeana)
423-004	252	105	26	28	29	1,224	15,071
423-034	317	108	14	48	50	1,219	15,116
423-043	306	103	11	33	45	1,248	15,112
423-048	178	94	10	14	18	1,284	15,472
423-051	316	117	16	38	59	1,225	15,051
423-063	292	124	17	24	30	1,218	15,096
423-066	187	84	11	24	26	1,351	14,519
423-067	283	99	16	33	45	1,238	15,094
423-070	252	113	20	36	56	1,237	15,199
423-072	274	85	13	35	43	1,261	15,216
Mean	266	103	15	31	40	1,251	15,095
430 (S. miyabeana × S. viminalis)
430-004	295	111	21	47	63	1,095	14,797
430-005	203	77	10	32	37	1,110	15,386
430-006	219	115	13	27	31	1,095	15,298
430-016	245	117	24	34	47	1,086	15,501
430-018	252	95	14	42	62	1,118	15,210
430-025	180	79	12	16	30	1,182	15,615
430-031	174	105	5	22	26	1,171	15,366
430-033	265	107	14	47	79	1,126	14,884
430-034	206	94	15	19	40	1,126	15,301
430-035	144	96	10	17	24	1,187	14,399
Mean	218	100	14	30	44	1,130	15,176

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