Statistics of different assemblies and BUSCO analysis results for the sweet cherry cv. Tieton genome
| Assembly . | Number of contigs . | Contig N50 (kb) . | Longest contig (kb) . | Total contig length (Mb) . | BUSCO analysis results . | ||||
|---|---|---|---|---|---|---|---|---|---|
| . | . | . | . | . | C . | S . | D . | F . | M . |
| MaSuRCA (Flye) | 2773 | 244.00 | 3148.23 | 322.30 | 98.1% | 84.4% | 13.7% | 0.4% | 1.5% |
| MaSuRCA (CABO) | 1550 | 855.32 | 5752.65 | 336.99 | 98.0% | 82.4% | 15.6% | 0.2% | 1.8% |
| Canu | 1863 | 715.83 | 10,366.47 | 409.75 | 67.2% | 56.1% | 11.1% | 16.9% | 15.9% |
| Canu-medaka-NextPolish | 2013 | 737.80 | 10,558.92 | 417.34 | 98.0% | 70.4% | 27.6% | 0.4% | 1.6% |
| Canu-medaka-NextPolish- Purge_Haplotigs | 462 | 1596.71 | 10,558.92 | 271.25 | 96.6% | 91.6% | 5.0% | 1.1%, | 2.3% |
| wtdbg2 | 9839 | 128.10 | 8345.69 | 467.82 | 88.0% | 85.7% | 2.3% | 5.1% | 6.9% |
| wtdbg2-medaka-NextPolish | 7589 | 171.84 | 8398.19 | 409.70 | 98.0% | 70.4% | 27.6% | 0.4% | 1.6% |
| wtdbg2-medaka-NextPolish- Purge_Haplotigs | 2959 | 402.20 | 8398.19 | 297.32 | 95.9% | 92.3% | 3.6% | 0.7% | 3.4% |
| NECAT | 1417 | 2205.17 | 13,496.20 | 416.95 | 79.4% | 69.7% | 9.7% | 11.2% | 9.4% |
| NECAT-medaka-NextPolish | 1390 | 2201.74 | 13,600.65 | 418.80 | 97.9% | 83.9% | 14.0% | 0.3% | 1.8% |
| NECAT-medaka-NextPolish- Purge_Haplotigs | 610 | 3247.20 | 13,603.98 | 344.29 | 97.4% | 91.2% | 6.2% | 0.5% | 2.1% |
| Assembly . | Number of contigs . | Contig N50 (kb) . | Longest contig (kb) . | Total contig length (Mb) . | BUSCO analysis results . | ||||
|---|---|---|---|---|---|---|---|---|---|
| . | . | . | . | . | C . | S . | D . | F . | M . |
| MaSuRCA (Flye) | 2773 | 244.00 | 3148.23 | 322.30 | 98.1% | 84.4% | 13.7% | 0.4% | 1.5% |
| MaSuRCA (CABO) | 1550 | 855.32 | 5752.65 | 336.99 | 98.0% | 82.4% | 15.6% | 0.2% | 1.8% |
| Canu | 1863 | 715.83 | 10,366.47 | 409.75 | 67.2% | 56.1% | 11.1% | 16.9% | 15.9% |
| Canu-medaka-NextPolish | 2013 | 737.80 | 10,558.92 | 417.34 | 98.0% | 70.4% | 27.6% | 0.4% | 1.6% |
| Canu-medaka-NextPolish- Purge_Haplotigs | 462 | 1596.71 | 10,558.92 | 271.25 | 96.6% | 91.6% | 5.0% | 1.1%, | 2.3% |
| wtdbg2 | 9839 | 128.10 | 8345.69 | 467.82 | 88.0% | 85.7% | 2.3% | 5.1% | 6.9% |
| wtdbg2-medaka-NextPolish | 7589 | 171.84 | 8398.19 | 409.70 | 98.0% | 70.4% | 27.6% | 0.4% | 1.6% |
| wtdbg2-medaka-NextPolish- Purge_Haplotigs | 2959 | 402.20 | 8398.19 | 297.32 | 95.9% | 92.3% | 3.6% | 0.7% | 3.4% |
| NECAT | 1417 | 2205.17 | 13,496.20 | 416.95 | 79.4% | 69.7% | 9.7% | 11.2% | 9.4% |
| NECAT-medaka-NextPolish | 1390 | 2201.74 | 13,600.65 | 418.80 | 97.9% | 83.9% | 14.0% | 0.3% | 1.8% |
| NECAT-medaka-NextPolish- Purge_Haplotigs | 610 | 3247.20 | 13,603.98 | 344.29 | 97.4% | 91.2% | 6.2% | 0.5% | 2.1% |
For the BUSCO analysis results, complete BUSCOs (C), complete and single-copy BUSCOs (S), complete and duplicated BUSCOs (D), fragmented BUSCOs (F), and missing BUSCOs (M). MaSuRCA (Flye): MaSuRCA was used to generate the conscience super reads, and Flye was used to assemble the genome. MaSuRCA (CABO): MaSuRCA was used to generate the conscience super reads, and CABO was used to assemble the genome
Statistics of different assemblies and BUSCO analysis results for the sweet cherry cv. Tieton genome
| Assembly . | Number of contigs . | Contig N50 (kb) . | Longest contig (kb) . | Total contig length (Mb) . | BUSCO analysis results . | ||||
|---|---|---|---|---|---|---|---|---|---|
| . | . | . | . | . | C . | S . | D . | F . | M . |
| MaSuRCA (Flye) | 2773 | 244.00 | 3148.23 | 322.30 | 98.1% | 84.4% | 13.7% | 0.4% | 1.5% |
| MaSuRCA (CABO) | 1550 | 855.32 | 5752.65 | 336.99 | 98.0% | 82.4% | 15.6% | 0.2% | 1.8% |
| Canu | 1863 | 715.83 | 10,366.47 | 409.75 | 67.2% | 56.1% | 11.1% | 16.9% | 15.9% |
| Canu-medaka-NextPolish | 2013 | 737.80 | 10,558.92 | 417.34 | 98.0% | 70.4% | 27.6% | 0.4% | 1.6% |
| Canu-medaka-NextPolish- Purge_Haplotigs | 462 | 1596.71 | 10,558.92 | 271.25 | 96.6% | 91.6% | 5.0% | 1.1%, | 2.3% |
| wtdbg2 | 9839 | 128.10 | 8345.69 | 467.82 | 88.0% | 85.7% | 2.3% | 5.1% | 6.9% |
| wtdbg2-medaka-NextPolish | 7589 | 171.84 | 8398.19 | 409.70 | 98.0% | 70.4% | 27.6% | 0.4% | 1.6% |
| wtdbg2-medaka-NextPolish- Purge_Haplotigs | 2959 | 402.20 | 8398.19 | 297.32 | 95.9% | 92.3% | 3.6% | 0.7% | 3.4% |
| NECAT | 1417 | 2205.17 | 13,496.20 | 416.95 | 79.4% | 69.7% | 9.7% | 11.2% | 9.4% |
| NECAT-medaka-NextPolish | 1390 | 2201.74 | 13,600.65 | 418.80 | 97.9% | 83.9% | 14.0% | 0.3% | 1.8% |
| NECAT-medaka-NextPolish- Purge_Haplotigs | 610 | 3247.20 | 13,603.98 | 344.29 | 97.4% | 91.2% | 6.2% | 0.5% | 2.1% |
| Assembly . | Number of contigs . | Contig N50 (kb) . | Longest contig (kb) . | Total contig length (Mb) . | BUSCO analysis results . | ||||
|---|---|---|---|---|---|---|---|---|---|
| . | . | . | . | . | C . | S . | D . | F . | M . |
| MaSuRCA (Flye) | 2773 | 244.00 | 3148.23 | 322.30 | 98.1% | 84.4% | 13.7% | 0.4% | 1.5% |
| MaSuRCA (CABO) | 1550 | 855.32 | 5752.65 | 336.99 | 98.0% | 82.4% | 15.6% | 0.2% | 1.8% |
| Canu | 1863 | 715.83 | 10,366.47 | 409.75 | 67.2% | 56.1% | 11.1% | 16.9% | 15.9% |
| Canu-medaka-NextPolish | 2013 | 737.80 | 10,558.92 | 417.34 | 98.0% | 70.4% | 27.6% | 0.4% | 1.6% |
| Canu-medaka-NextPolish- Purge_Haplotigs | 462 | 1596.71 | 10,558.92 | 271.25 | 96.6% | 91.6% | 5.0% | 1.1%, | 2.3% |
| wtdbg2 | 9839 | 128.10 | 8345.69 | 467.82 | 88.0% | 85.7% | 2.3% | 5.1% | 6.9% |
| wtdbg2-medaka-NextPolish | 7589 | 171.84 | 8398.19 | 409.70 | 98.0% | 70.4% | 27.6% | 0.4% | 1.6% |
| wtdbg2-medaka-NextPolish- Purge_Haplotigs | 2959 | 402.20 | 8398.19 | 297.32 | 95.9% | 92.3% | 3.6% | 0.7% | 3.4% |
| NECAT | 1417 | 2205.17 | 13,496.20 | 416.95 | 79.4% | 69.7% | 9.7% | 11.2% | 9.4% |
| NECAT-medaka-NextPolish | 1390 | 2201.74 | 13,600.65 | 418.80 | 97.9% | 83.9% | 14.0% | 0.3% | 1.8% |
| NECAT-medaka-NextPolish- Purge_Haplotigs | 610 | 3247.20 | 13,603.98 | 344.29 | 97.4% | 91.2% | 6.2% | 0.5% | 2.1% |
For the BUSCO analysis results, complete BUSCOs (C), complete and single-copy BUSCOs (S), complete and duplicated BUSCOs (D), fragmented BUSCOs (F), and missing BUSCOs (M). MaSuRCA (Flye): MaSuRCA was used to generate the conscience super reads, and Flye was used to assemble the genome. MaSuRCA (CABO): MaSuRCA was used to generate the conscience super reads, and CABO was used to assemble the genome
This PDF is available to Subscribers Only
View Article Abstract & Purchase OptionsFor full access to this pdf, sign in to an existing account, or purchase an annual subscription.
