Table 1.

Novel MTases whose specificities were experimentally confirmed. The underlined characters indicate modified bases.

Gene IDGenome IDLineageTop-hit protein in REBASEIdentity (%)RM typeRecognition motif of the closest-match MTaseModification positionModification typeRM systemMTase nameConfirmed recognition motifNovel specificity
CM15mP129_7780CM1_5m.P129Bacteria; Chloroflexi; NA; NA; NA; NA; NAM.Spn6BI35.5IITCTAGA(unknown)(unknown)NoM.CspCM15mP129IACAAAYes
Ct9H90mP5_10800Ct9H_90m.P5Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; NA; NA; NAM.Sgl8271II26.8IIATTAAT5m6ANoM.AspCt9H90mP5IBAAAAYes
CM1200mP2_5150CM1_200m.P2Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; NA; Planctomycetaceae bacteriumM.Sgl8271II24.5IIATTAAT5m6ANoM.PspCM1200mP2ICAAATYes
CM1200mP10_13750CM1_200m.P10Bacteria; Candidatus Marinimicrobia; NA; NA; NA; NA; Candidatus Marinimicrobia bacteriumM2.HpyAII44.2IIGAAGA-2m4CNoM.MspCM1200mP10ICTCCYes
Ct9H300mP26_1870Ct9H_300m.P26Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; NA; NA; NAM.TliI25.0IICTCGAG5m6ANoM.AspCt9H300mP26IBAAAAYes
CM15mP16_9820CM1_5m.P16Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; NA; NA; NAM.CspNS6I62.9IIGANTC2m6ANoM.PspCM15mP16IGANTCNo
CM15mP20_30CM1_5m.P20Bacteria; Proteobacteria; Alphaproteobacteria; NA; NA; NA; Alphaproteobacteria bacteriumM.SmeI59.9?GANTC2m6ANoM.AspCM15mP20IGADTCYes
CM15mP30_3110CM1_5m.P30Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; NA; Pelagibacteraceae bacteriumM.Bba35685I49.9IIGANTC2m6ANoM.PspCM15mP30IGAWTCNo
CM15mP57_4380CM1_5m.P57Bacteria; Proteobacteria; Alphaproteobacteria; NA; NA; NA; NAM.SmeI57.0?GANTC2m6ANoM.AspCM15mP57IGAWTCNo
CM15mP70_4410CM1_5m.P70Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; NA; AlphaproteobacteriumM.Bsp460I48.0IIGANTC2m6ANoM.PspCM15mP70IGAWTCNo
CM15mP111_3240CM1_5m.P111Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; NA; NA; NAM.SstE37II55.6IIGANTC2m6ANoM.RspCM15mP111IGAWTCNo
Gene IDGenome IDLineageTop-hit protein in REBASEIdentity (%)RM typeRecognition motif of the closest-match MTaseModification positionModification typeRM systemMTase nameConfirmed recognition motifNovel specificity
CM15mP129_7780CM1_5m.P129Bacteria; Chloroflexi; NA; NA; NA; NA; NAM.Spn6BI35.5IITCTAGA(unknown)(unknown)NoM.CspCM15mP129IACAAAYes
Ct9H90mP5_10800Ct9H_90m.P5Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; NA; NA; NAM.Sgl8271II26.8IIATTAAT5m6ANoM.AspCt9H90mP5IBAAAAYes
CM1200mP2_5150CM1_200m.P2Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; NA; Planctomycetaceae bacteriumM.Sgl8271II24.5IIATTAAT5m6ANoM.PspCM1200mP2ICAAATYes
CM1200mP10_13750CM1_200m.P10Bacteria; Candidatus Marinimicrobia; NA; NA; NA; NA; Candidatus Marinimicrobia bacteriumM2.HpyAII44.2IIGAAGA-2m4CNoM.MspCM1200mP10ICTCCYes
Ct9H300mP26_1870Ct9H_300m.P26Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; NA; NA; NAM.TliI25.0IICTCGAG5m6ANoM.AspCt9H300mP26IBAAAAYes
CM15mP16_9820CM1_5m.P16Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; NA; NA; NAM.CspNS6I62.9IIGANTC2m6ANoM.PspCM15mP16IGANTCNo
CM15mP20_30CM1_5m.P20Bacteria; Proteobacteria; Alphaproteobacteria; NA; NA; NA; Alphaproteobacteria bacteriumM.SmeI59.9?GANTC2m6ANoM.AspCM15mP20IGADTCYes
CM15mP30_3110CM1_5m.P30Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; NA; Pelagibacteraceae bacteriumM.Bba35685I49.9IIGANTC2m6ANoM.PspCM15mP30IGAWTCNo
CM15mP57_4380CM1_5m.P57Bacteria; Proteobacteria; Alphaproteobacteria; NA; NA; NA; NAM.SmeI57.0?GANTC2m6ANoM.AspCM15mP57IGAWTCNo
CM15mP70_4410CM1_5m.P70Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; NA; AlphaproteobacteriumM.Bsp460I48.0IIGANTC2m6ANoM.PspCM15mP70IGAWTCNo
CM15mP111_3240CM1_5m.P111Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; NA; NA; NAM.SstE37II55.6IIGANTC2m6ANoM.RspCM15mP111IGAWTCNo
Table 1.

Novel MTases whose specificities were experimentally confirmed. The underlined characters indicate modified bases.

Gene IDGenome IDLineageTop-hit protein in REBASEIdentity (%)RM typeRecognition motif of the closest-match MTaseModification positionModification typeRM systemMTase nameConfirmed recognition motifNovel specificity
CM15mP129_7780CM1_5m.P129Bacteria; Chloroflexi; NA; NA; NA; NA; NAM.Spn6BI35.5IITCTAGA(unknown)(unknown)NoM.CspCM15mP129IACAAAYes
Ct9H90mP5_10800Ct9H_90m.P5Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; NA; NA; NAM.Sgl8271II26.8IIATTAAT5m6ANoM.AspCt9H90mP5IBAAAAYes
CM1200mP2_5150CM1_200m.P2Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; NA; Planctomycetaceae bacteriumM.Sgl8271II24.5IIATTAAT5m6ANoM.PspCM1200mP2ICAAATYes
CM1200mP10_13750CM1_200m.P10Bacteria; Candidatus Marinimicrobia; NA; NA; NA; NA; Candidatus Marinimicrobia bacteriumM2.HpyAII44.2IIGAAGA-2m4CNoM.MspCM1200mP10ICTCCYes
Ct9H300mP26_1870Ct9H_300m.P26Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; NA; NA; NAM.TliI25.0IICTCGAG5m6ANoM.AspCt9H300mP26IBAAAAYes
CM15mP16_9820CM1_5m.P16Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; NA; NA; NAM.CspNS6I62.9IIGANTC2m6ANoM.PspCM15mP16IGANTCNo
CM15mP20_30CM1_5m.P20Bacteria; Proteobacteria; Alphaproteobacteria; NA; NA; NA; Alphaproteobacteria bacteriumM.SmeI59.9?GANTC2m6ANoM.AspCM15mP20IGADTCYes
CM15mP30_3110CM1_5m.P30Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; NA; Pelagibacteraceae bacteriumM.Bba35685I49.9IIGANTC2m6ANoM.PspCM15mP30IGAWTCNo
CM15mP57_4380CM1_5m.P57Bacteria; Proteobacteria; Alphaproteobacteria; NA; NA; NA; NAM.SmeI57.0?GANTC2m6ANoM.AspCM15mP57IGAWTCNo
CM15mP70_4410CM1_5m.P70Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; NA; AlphaproteobacteriumM.Bsp460I48.0IIGANTC2m6ANoM.PspCM15mP70IGAWTCNo
CM15mP111_3240CM1_5m.P111Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; NA; NA; NAM.SstE37II55.6IIGANTC2m6ANoM.RspCM15mP111IGAWTCNo
Gene IDGenome IDLineageTop-hit protein in REBASEIdentity (%)RM typeRecognition motif of the closest-match MTaseModification positionModification typeRM systemMTase nameConfirmed recognition motifNovel specificity
CM15mP129_7780CM1_5m.P129Bacteria; Chloroflexi; NA; NA; NA; NA; NAM.Spn6BI35.5IITCTAGA(unknown)(unknown)NoM.CspCM15mP129IACAAAYes
Ct9H90mP5_10800Ct9H_90m.P5Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; NA; NA; NAM.Sgl8271II26.8IIATTAAT5m6ANoM.AspCt9H90mP5IBAAAAYes
CM1200mP2_5150CM1_200m.P2Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; NA; Planctomycetaceae bacteriumM.Sgl8271II24.5IIATTAAT5m6ANoM.PspCM1200mP2ICAAATYes
CM1200mP10_13750CM1_200m.P10Bacteria; Candidatus Marinimicrobia; NA; NA; NA; NA; Candidatus Marinimicrobia bacteriumM2.HpyAII44.2IIGAAGA-2m4CNoM.MspCM1200mP10ICTCCYes
Ct9H300mP26_1870Ct9H_300m.P26Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; NA; NA; NAM.TliI25.0IICTCGAG5m6ANoM.AspCt9H300mP26IBAAAAYes
CM15mP16_9820CM1_5m.P16Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; NA; NA; NAM.CspNS6I62.9IIGANTC2m6ANoM.PspCM15mP16IGANTCNo
CM15mP20_30CM1_5m.P20Bacteria; Proteobacteria; Alphaproteobacteria; NA; NA; NA; Alphaproteobacteria bacteriumM.SmeI59.9?GANTC2m6ANoM.AspCM15mP20IGADTCYes
CM15mP30_3110CM1_5m.P30Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; NA; Pelagibacteraceae bacteriumM.Bba35685I49.9IIGANTC2m6ANoM.PspCM15mP30IGAWTCNo
CM15mP57_4380CM1_5m.P57Bacteria; Proteobacteria; Alphaproteobacteria; NA; NA; NA; NAM.SmeI57.0?GANTC2m6ANoM.AspCM15mP57IGAWTCNo
CM15mP70_4410CM1_5m.P70Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; NA; AlphaproteobacteriumM.Bsp460I48.0IIGANTC2m6ANoM.PspCM15mP70IGAWTCNo
CM15mP111_3240CM1_5m.P111Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; NA; NA; NAM.SstE37II55.6IIGANTC2m6ANoM.RspCM15mP111IGAWTCNo
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