Table 2

The top related signatures for Xuesaitong injection and stroke model on each scale

Scale nameSignature descriptionModel CS/TCSXST CS/TCSModel NCSXST NCSModel P-valueXST P-valueModel FDRXST FDR
TissueBrain−1.080.91−15.2712.350.000.000.000.00
CellMicroglial cell0.49−0.3611.45−8.420.000.000.000.00
Macrophage0.65−0.5510.20−8.350.000.000.000.00
Lymphoid cell−0.560.47−13.8411.260.000.000.000.00
Neuron−0.650.45−14.6310.530.000.000.000.00
Pathological processNecrobiotic xanthogranuloma0.55−0.529.06−8.450.000.000.000.00
Visceral prolapse0.46−0.368.67−6.690.000.000.000.00
Inflammation0.16−0.128.67−6.360.000.000.000.00
Nephrogenic fibrosing dermopathy0.55−0.458.40−7.210.000.000.000.00
Serositis0.51−0.398.19−6.190.000.000.000.00
Granuloma, plasma cell0.52−0.478.11−7.610.000.000.000.00
Uterine prolapse0.45−0.378.06−6.510.000.000.000.00
Bisphosphonate-associated osteonecrosis of the jaw0.41−0.337.94−6.640.000.000.000.00
Granuloma, respiratory tract0.41−0.327.61−5.870.000.000.000.00
Granuloma annulare0.49−0.457.52−6.970.000.000.000.00
PathwayCoronavirus disease – COVID-190.39−0.215.61−2.960.000.000.000.00
Glutamatergic synapse−0.420.31−4.953.650.000.000.000.00
Circadian entrainment−0.390.33−4.253.470.000.000.000.00
Neuroactive ligand–receptor interaction−0.220.16−4.193.160.000.000.000.00
Ribosome0.36−0.384.07−4.180.000.000.000.00
Cytokine–cytokine receptor interaction0.25−0.194.05−2.960.000.000.000.00
NF-kappa B signaling pathway0.36−0.193.91−2.010.000.000.000.02
NOD-like receptor signaling pathway0.30−0.143.88−1.810.000.010.000.04
Measles0.32−0.153.88−1.800.000.030.000.04
Cholinergic synapse−0.320.25−3.762.940.000.000.000.00
Biological processSynaptic signaling−0.360.25−8.976.000.000.000.000.00
Chemical synaptic transmission−0.370.25−8.905.920.000.000.000.00
Anterograde trans-synaptic signaling−0.370.25−8.866.050.000.000.000.00
Trans-synaptic signaling−0.360.25−8.755.920.000.000.000.00
Cell activation0.27−0.208.50−6.070.000.000.000.00
Immune effector process0.28−0.178.27−5.020.000.000.000.00
Leukocyte activation0.27−0.198.08−5.790.000.000.000.00
myeloid leukocyte activation0.31−0.227.56−5.480.000.000.000.00
Leukocyte-mediated immunity0.29−0.217.47−5.440.000.000.000.00
Response to cytokine0.26−0.117.31−3.200.000.000.000.00
TargetNCOR2−0.740.63−10.488.850.000.000.000.01
JOSD1−0.600.56−8.738.120.000.000.000.00
GDI1−0.600.54−8.467.290.000.000.000.00
E2F60.58−0.488.34−6.870.000.000.010.00
IQGAP1−0.610.52−8.297.680.000.000.000.00
LARS−0.550.55−8.167.770.000.000.000.00
FAM69A−0.560.41−8.156.000.000.000.000.00
ACO2−0.570.47−8.116.620.000.000.000.00
RNF186−0.590.55−8.097.650.000.000.000.00
HGS−0.560.47−7.956.420.000.000.000.00
Scale nameSignature descriptionModel CS/TCSXST CS/TCSModel NCSXST NCSModel P-valueXST P-valueModel FDRXST FDR
TissueBrain−1.080.91−15.2712.350.000.000.000.00
CellMicroglial cell0.49−0.3611.45−8.420.000.000.000.00
Macrophage0.65−0.5510.20−8.350.000.000.000.00
Lymphoid cell−0.560.47−13.8411.260.000.000.000.00
Neuron−0.650.45−14.6310.530.000.000.000.00
Pathological processNecrobiotic xanthogranuloma0.55−0.529.06−8.450.000.000.000.00
Visceral prolapse0.46−0.368.67−6.690.000.000.000.00
Inflammation0.16−0.128.67−6.360.000.000.000.00
Nephrogenic fibrosing dermopathy0.55−0.458.40−7.210.000.000.000.00
Serositis0.51−0.398.19−6.190.000.000.000.00
Granuloma, plasma cell0.52−0.478.11−7.610.000.000.000.00
Uterine prolapse0.45−0.378.06−6.510.000.000.000.00
Bisphosphonate-associated osteonecrosis of the jaw0.41−0.337.94−6.640.000.000.000.00
Granuloma, respiratory tract0.41−0.327.61−5.870.000.000.000.00
Granuloma annulare0.49−0.457.52−6.970.000.000.000.00
PathwayCoronavirus disease – COVID-190.39−0.215.61−2.960.000.000.000.00
Glutamatergic synapse−0.420.31−4.953.650.000.000.000.00
Circadian entrainment−0.390.33−4.253.470.000.000.000.00
Neuroactive ligand–receptor interaction−0.220.16−4.193.160.000.000.000.00
Ribosome0.36−0.384.07−4.180.000.000.000.00
Cytokine–cytokine receptor interaction0.25−0.194.05−2.960.000.000.000.00
NF-kappa B signaling pathway0.36−0.193.91−2.010.000.000.000.02
NOD-like receptor signaling pathway0.30−0.143.88−1.810.000.010.000.04
Measles0.32−0.153.88−1.800.000.030.000.04
Cholinergic synapse−0.320.25−3.762.940.000.000.000.00
Biological processSynaptic signaling−0.360.25−8.976.000.000.000.000.00
Chemical synaptic transmission−0.370.25−8.905.920.000.000.000.00
Anterograde trans-synaptic signaling−0.370.25−8.866.050.000.000.000.00
Trans-synaptic signaling−0.360.25−8.755.920.000.000.000.00
Cell activation0.27−0.208.50−6.070.000.000.000.00
Immune effector process0.28−0.178.27−5.020.000.000.000.00
Leukocyte activation0.27−0.198.08−5.790.000.000.000.00
myeloid leukocyte activation0.31−0.227.56−5.480.000.000.000.00
Leukocyte-mediated immunity0.29−0.217.47−5.440.000.000.000.00
Response to cytokine0.26−0.117.31−3.200.000.000.000.00
TargetNCOR2−0.740.63−10.488.850.000.000.000.01
JOSD1−0.600.56−8.738.120.000.000.000.00
GDI1−0.600.54−8.467.290.000.000.000.00
E2F60.58−0.488.34−6.870.000.000.010.00
IQGAP1−0.610.52−8.297.680.000.000.000.00
LARS−0.550.55−8.167.770.000.000.000.00
FAM69A−0.560.41−8.156.000.000.000.000.00
ACO2−0.570.47−8.116.620.000.000.000.00
RNF186−0.590.55−8.097.650.000.000.000.00
HGS−0.560.47−7.956.420.000.000.000.00
Table 2

The top related signatures for Xuesaitong injection and stroke model on each scale

Scale nameSignature descriptionModel CS/TCSXST CS/TCSModel NCSXST NCSModel P-valueXST P-valueModel FDRXST FDR
TissueBrain−1.080.91−15.2712.350.000.000.000.00
CellMicroglial cell0.49−0.3611.45−8.420.000.000.000.00
Macrophage0.65−0.5510.20−8.350.000.000.000.00
Lymphoid cell−0.560.47−13.8411.260.000.000.000.00
Neuron−0.650.45−14.6310.530.000.000.000.00
Pathological processNecrobiotic xanthogranuloma0.55−0.529.06−8.450.000.000.000.00
Visceral prolapse0.46−0.368.67−6.690.000.000.000.00
Inflammation0.16−0.128.67−6.360.000.000.000.00
Nephrogenic fibrosing dermopathy0.55−0.458.40−7.210.000.000.000.00
Serositis0.51−0.398.19−6.190.000.000.000.00
Granuloma, plasma cell0.52−0.478.11−7.610.000.000.000.00
Uterine prolapse0.45−0.378.06−6.510.000.000.000.00
Bisphosphonate-associated osteonecrosis of the jaw0.41−0.337.94−6.640.000.000.000.00
Granuloma, respiratory tract0.41−0.327.61−5.870.000.000.000.00
Granuloma annulare0.49−0.457.52−6.970.000.000.000.00
PathwayCoronavirus disease – COVID-190.39−0.215.61−2.960.000.000.000.00
Glutamatergic synapse−0.420.31−4.953.650.000.000.000.00
Circadian entrainment−0.390.33−4.253.470.000.000.000.00
Neuroactive ligand–receptor interaction−0.220.16−4.193.160.000.000.000.00
Ribosome0.36−0.384.07−4.180.000.000.000.00
Cytokine–cytokine receptor interaction0.25−0.194.05−2.960.000.000.000.00
NF-kappa B signaling pathway0.36−0.193.91−2.010.000.000.000.02
NOD-like receptor signaling pathway0.30−0.143.88−1.810.000.010.000.04
Measles0.32−0.153.88−1.800.000.030.000.04
Cholinergic synapse−0.320.25−3.762.940.000.000.000.00
Biological processSynaptic signaling−0.360.25−8.976.000.000.000.000.00
Chemical synaptic transmission−0.370.25−8.905.920.000.000.000.00
Anterograde trans-synaptic signaling−0.370.25−8.866.050.000.000.000.00
Trans-synaptic signaling−0.360.25−8.755.920.000.000.000.00
Cell activation0.27−0.208.50−6.070.000.000.000.00
Immune effector process0.28−0.178.27−5.020.000.000.000.00
Leukocyte activation0.27−0.198.08−5.790.000.000.000.00
myeloid leukocyte activation0.31−0.227.56−5.480.000.000.000.00
Leukocyte-mediated immunity0.29−0.217.47−5.440.000.000.000.00
Response to cytokine0.26−0.117.31−3.200.000.000.000.00
TargetNCOR2−0.740.63−10.488.850.000.000.000.01
JOSD1−0.600.56−8.738.120.000.000.000.00
GDI1−0.600.54−8.467.290.000.000.000.00
E2F60.58−0.488.34−6.870.000.000.010.00
IQGAP1−0.610.52−8.297.680.000.000.000.00
LARS−0.550.55−8.167.770.000.000.000.00
FAM69A−0.560.41−8.156.000.000.000.000.00
ACO2−0.570.47−8.116.620.000.000.000.00
RNF186−0.590.55−8.097.650.000.000.000.00
HGS−0.560.47−7.956.420.000.000.000.00
Scale nameSignature descriptionModel CS/TCSXST CS/TCSModel NCSXST NCSModel P-valueXST P-valueModel FDRXST FDR
TissueBrain−1.080.91−15.2712.350.000.000.000.00
CellMicroglial cell0.49−0.3611.45−8.420.000.000.000.00
Macrophage0.65−0.5510.20−8.350.000.000.000.00
Lymphoid cell−0.560.47−13.8411.260.000.000.000.00
Neuron−0.650.45−14.6310.530.000.000.000.00
Pathological processNecrobiotic xanthogranuloma0.55−0.529.06−8.450.000.000.000.00
Visceral prolapse0.46−0.368.67−6.690.000.000.000.00
Inflammation0.16−0.128.67−6.360.000.000.000.00
Nephrogenic fibrosing dermopathy0.55−0.458.40−7.210.000.000.000.00
Serositis0.51−0.398.19−6.190.000.000.000.00
Granuloma, plasma cell0.52−0.478.11−7.610.000.000.000.00
Uterine prolapse0.45−0.378.06−6.510.000.000.000.00
Bisphosphonate-associated osteonecrosis of the jaw0.41−0.337.94−6.640.000.000.000.00
Granuloma, respiratory tract0.41−0.327.61−5.870.000.000.000.00
Granuloma annulare0.49−0.457.52−6.970.000.000.000.00
PathwayCoronavirus disease – COVID-190.39−0.215.61−2.960.000.000.000.00
Glutamatergic synapse−0.420.31−4.953.650.000.000.000.00
Circadian entrainment−0.390.33−4.253.470.000.000.000.00
Neuroactive ligand–receptor interaction−0.220.16−4.193.160.000.000.000.00
Ribosome0.36−0.384.07−4.180.000.000.000.00
Cytokine–cytokine receptor interaction0.25−0.194.05−2.960.000.000.000.00
NF-kappa B signaling pathway0.36−0.193.91−2.010.000.000.000.02
NOD-like receptor signaling pathway0.30−0.143.88−1.810.000.010.000.04
Measles0.32−0.153.88−1.800.000.030.000.04
Cholinergic synapse−0.320.25−3.762.940.000.000.000.00
Biological processSynaptic signaling−0.360.25−8.976.000.000.000.000.00
Chemical synaptic transmission−0.370.25−8.905.920.000.000.000.00
Anterograde trans-synaptic signaling−0.370.25−8.866.050.000.000.000.00
Trans-synaptic signaling−0.360.25−8.755.920.000.000.000.00
Cell activation0.27−0.208.50−6.070.000.000.000.00
Immune effector process0.28−0.178.27−5.020.000.000.000.00
Leukocyte activation0.27−0.198.08−5.790.000.000.000.00
myeloid leukocyte activation0.31−0.227.56−5.480.000.000.000.00
Leukocyte-mediated immunity0.29−0.217.47−5.440.000.000.000.00
Response to cytokine0.26−0.117.31−3.200.000.000.000.00
TargetNCOR2−0.740.63−10.488.850.000.000.000.01
JOSD1−0.600.56−8.738.120.000.000.000.00
GDI1−0.600.54−8.467.290.000.000.000.00
E2F60.58−0.488.34−6.870.000.000.010.00
IQGAP1−0.610.52−8.297.680.000.000.000.00
LARS−0.550.55−8.167.770.000.000.000.00
FAM69A−0.560.41−8.156.000.000.000.000.00
ACO2−0.570.47−8.116.620.000.000.000.00
RNF186−0.590.55−8.097.650.000.000.000.00
HGS−0.560.47−7.956.420.000.000.000.00
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