| Genea . | Cladea . | ESTb . | Tissue . |
|---|---|---|---|
| A1 | C | — | — |
| A2 | C | — | — |
| A3 | C | — | — |
| A4 | C | AL924233 (99%) | Whole fish (embryo and adult) |
| A5 | C | CB356582 (100%); CB354777 (99%); AW777840 (100%); AI522354.1 (96%) | Whole fish (0–72 hpf); 26 somite embryos, adult livers, shield stage embryos |
| B1 | S | BC044194 (99%) | Whole fish (adult) |
| B2 | S | CB353600 (100%) | Whole fish (0–72 hpf) |
| B3 | S | AF180893 (98%); AI641219 (99%) | Embryonic fast muscle (10 ≥ 22 somites); 26 somite embryos, adult livers, shield-stage embryos |
| Other Bc | NM_152982; BC044194; AF165817; AI957444; AI618577 | Embryonic cranial muscles, pectoral fin, and tail muscle; 26 somite embryos, adult livers, shield-stage embryos and; embryonic heart 3 dpf | |
| C1 | C | AF114427 (99%); AI105857 (99%) | Embryonic ventricle; adult myocardium/endocardium/vessel |
| C2 | C | BE693126 (99%); BQ262137 (98%) | Embryonic heart 3 dpf; whole fish (adult male) |
| D1 | S | AL914053 (99%); AI882980 (99%); BM573824 (96%) | Whole fish (embryo and adult); whole fish (adult); adult pectoral fin |
| Q | S | AL923098 (100%)1; AW343155 (98%)2 | Whole fish (adult and mixed stages) |
| X | C* | AI878213 (100%)3; BM280081 (100%)4; AW454123 (99%)5 | 26 Somite embryos, adult livers, shield stage embryos; adult heart; embryonic heart 3 dpf |
| Y | U | — | — |
| Z | U | — | — |
| Genea . | Cladea . | ESTb . | Tissue . |
|---|---|---|---|
| A1 | C | — | — |
| A2 | C | — | — |
| A3 | C | — | — |
| A4 | C | AL924233 (99%) | Whole fish (embryo and adult) |
| A5 | C | CB356582 (100%); CB354777 (99%); AW777840 (100%); AI522354.1 (96%) | Whole fish (0–72 hpf); 26 somite embryos, adult livers, shield stage embryos |
| B1 | S | BC044194 (99%) | Whole fish (adult) |
| B2 | S | CB353600 (100%) | Whole fish (0–72 hpf) |
| B3 | S | AF180893 (98%); AI641219 (99%) | Embryonic fast muscle (10 ≥ 22 somites); 26 somite embryos, adult livers, shield-stage embryos |
| Other Bc | NM_152982; BC044194; AF165817; AI957444; AI618577 | Embryonic cranial muscles, pectoral fin, and tail muscle; 26 somite embryos, adult livers, shield-stage embryos and; embryonic heart 3 dpf | |
| C1 | C | AF114427 (99%); AI105857 (99%) | Embryonic ventricle; adult myocardium/endocardium/vessel |
| C2 | C | BE693126 (99%); BQ262137 (98%) | Embryonic heart 3 dpf; whole fish (adult male) |
| D1 | S | AL914053 (99%); AI882980 (99%); BM573824 (96%) | Whole fish (embryo and adult); whole fish (adult); adult pectoral fin |
| Q | S | AL923098 (100%)1; AW343155 (98%)2 | Whole fish (adult and mixed stages) |
| X | C* | AI878213 (100%)3; BM280081 (100%)4; AW454123 (99%)5 | 26 Somite embryos, adult livers, shield stage embryos; adult heart; embryonic heart 3 dpf |
| Y | U | — | — |
| Z | U | — | — |
a Gene codes and clades defined in table 2.
b EST matches for 3′ or 5′ UTR, Loop 1 or Loop 2, except Dre Q and Dre X: 1 Exons 27–30; 2 Exons 30–34; 3 Exons 27–29; 4 Exons 26–27; 5 Exons 36–37. Across the region matched by ESTs Dre Q was <81% similar to other D. rerio genes and Dre X was <73% similar to other D. rerio genes.
c Other genes on ctg11069.2.
| Genea . | Cladea . | ESTb . | Tissue . |
|---|---|---|---|
| A1 | C | — | — |
| A2 | C | — | — |
| A3 | C | — | — |
| A4 | C | AL924233 (99%) | Whole fish (embryo and adult) |
| A5 | C | CB356582 (100%); CB354777 (99%); AW777840 (100%); AI522354.1 (96%) | Whole fish (0–72 hpf); 26 somite embryos, adult livers, shield stage embryos |
| B1 | S | BC044194 (99%) | Whole fish (adult) |
| B2 | S | CB353600 (100%) | Whole fish (0–72 hpf) |
| B3 | S | AF180893 (98%); AI641219 (99%) | Embryonic fast muscle (10 ≥ 22 somites); 26 somite embryos, adult livers, shield-stage embryos |
| Other Bc | NM_152982; BC044194; AF165817; AI957444; AI618577 | Embryonic cranial muscles, pectoral fin, and tail muscle; 26 somite embryos, adult livers, shield-stage embryos and; embryonic heart 3 dpf | |
| C1 | C | AF114427 (99%); AI105857 (99%) | Embryonic ventricle; adult myocardium/endocardium/vessel |
| C2 | C | BE693126 (99%); BQ262137 (98%) | Embryonic heart 3 dpf; whole fish (adult male) |
| D1 | S | AL914053 (99%); AI882980 (99%); BM573824 (96%) | Whole fish (embryo and adult); whole fish (adult); adult pectoral fin |
| Q | S | AL923098 (100%)1; AW343155 (98%)2 | Whole fish (adult and mixed stages) |
| X | C* | AI878213 (100%)3; BM280081 (100%)4; AW454123 (99%)5 | 26 Somite embryos, adult livers, shield stage embryos; adult heart; embryonic heart 3 dpf |
| Y | U | — | — |
| Z | U | — | — |
| Genea . | Cladea . | ESTb . | Tissue . |
|---|---|---|---|
| A1 | C | — | — |
| A2 | C | — | — |
| A3 | C | — | — |
| A4 | C | AL924233 (99%) | Whole fish (embryo and adult) |
| A5 | C | CB356582 (100%); CB354777 (99%); AW777840 (100%); AI522354.1 (96%) | Whole fish (0–72 hpf); 26 somite embryos, adult livers, shield stage embryos |
| B1 | S | BC044194 (99%) | Whole fish (adult) |
| B2 | S | CB353600 (100%) | Whole fish (0–72 hpf) |
| B3 | S | AF180893 (98%); AI641219 (99%) | Embryonic fast muscle (10 ≥ 22 somites); 26 somite embryos, adult livers, shield-stage embryos |
| Other Bc | NM_152982; BC044194; AF165817; AI957444; AI618577 | Embryonic cranial muscles, pectoral fin, and tail muscle; 26 somite embryos, adult livers, shield-stage embryos and; embryonic heart 3 dpf | |
| C1 | C | AF114427 (99%); AI105857 (99%) | Embryonic ventricle; adult myocardium/endocardium/vessel |
| C2 | C | BE693126 (99%); BQ262137 (98%) | Embryonic heart 3 dpf; whole fish (adult male) |
| D1 | S | AL914053 (99%); AI882980 (99%); BM573824 (96%) | Whole fish (embryo and adult); whole fish (adult); adult pectoral fin |
| Q | S | AL923098 (100%)1; AW343155 (98%)2 | Whole fish (adult and mixed stages) |
| X | C* | AI878213 (100%)3; BM280081 (100%)4; AW454123 (99%)5 | 26 Somite embryos, adult livers, shield stage embryos; adult heart; embryonic heart 3 dpf |
| Y | U | — | — |
| Z | U | — | — |
a Gene codes and clades defined in table 2.
b EST matches for 3′ or 5′ UTR, Loop 1 or Loop 2, except Dre Q and Dre X: 1 Exons 27–30; 2 Exons 30–34; 3 Exons 27–29; 4 Exons 26–27; 5 Exons 36–37. Across the region matched by ESTs Dre Q was <81% similar to other D. rerio genes and Dre X was <73% similar to other D. rerio genes.
c Other genes on ctg11069.2.
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