Relative abundances (>0.5%) of oomycete genera/species detected in the rhizosphere of R. corymbifera ‘Laxa’ grown for eight weeks in untreated (U) and γ-irradiated (G) RRD soil from two sites (S and H)
| Phylum . | Genus . | Species . | OTU_ID . | Site H . | Site S . | ||
|---|---|---|---|---|---|---|---|
| HU . | HG . | SU . | SG . | ||||
| Oomycetes | Globisporangium | Globisporangium mamillatum | OTU_1 | 20.13 ± 31.71 | 7.12 ± 7.89 | 29.70 ± 19.64 | 60.81 ± 42.44 |
| G. ultimum | OTU_10 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.62 ± 0.38 a | 0.00 ± 0.00 b | ||
| Globisporangium attrantheridium | OTU_279 | 0.03 ± 0.06 | 0.05 ± 0.12 | 9.68 ± 8.27 a | 0.58 ± 1.08 b | ||
| Globisporangium apiculatum | OTU_53 | 0.00 ± 0.00 | 0.05 ± 0.12 | 0.23 ± 0.32 | 7.55 ± 14.50 | ||
| Globisporangium heterothallicum | OTU_9 | 0.00 ± 0.00 | 0.00 ± 0.00 | 6.50 ± 10.47 | 0.58 ± 1.16 | ||
| Myzocytiopsis | M. subuliformis | OTU_5 | 0.00 ± 0.00 a | 53.65 ± 40.97 b | 0.00 ± 0.00 | 0.74 ± 1.48 | |
| Peronospora | P. potentillae-anserinae | OTU_2 | 53.10 ± 33.35 a | 0.23 ± 0.28 b | 23.97 ± 41.95 | 1.00 ± 1.75 | |
| E. butleri | OTU_3 | 1.19 ± 1.23 | 20.80 ± 24.55 | 3.97 ± 3.02 a | 0.26 ± 0.52 b | ||
| Pythiogeton | P. ramosum | OTU_349 | 2.42 ± 3.17 | 0.15 ± 0.14 | 1.88 ± 1.56 a | 0.00 ± 0.00 b | |
| Pythium | Pythium acanthicum | OTU_14 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.31 ± 0.69 | 0.74 ± 1.48 | |
| Pythium monospermum | OTU_28 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.03 ± 0.06 | 0.61 ± 0.80 | ||
| Phytophthora | Phytophthora andina | OTU_11 | 0.71 ± 1.42 | 0.46 ± 1.04 | 7.33 ± 10.49 | 0.16 ± 0.24 | |
| Phytophthora cinnamomi | OTU_34 | 0.00 ± 0.00 | 0.00 ± 0.00 | 1.11 ± 1.90 | 0.06 ± 0.13 | ||
| Phytophthora bisheria | OTU_7 | 12.94 ± 17.18 | 2.81 ± 6.29 | 0.03 ± 0.06 | 24.81 ± 49.01 | ||
| Phylum . | Genus . | Species . | OTU_ID . | Site H . | Site S . | ||
|---|---|---|---|---|---|---|---|
| HU . | HG . | SU . | SG . | ||||
| Oomycetes | Globisporangium | Globisporangium mamillatum | OTU_1 | 20.13 ± 31.71 | 7.12 ± 7.89 | 29.70 ± 19.64 | 60.81 ± 42.44 |
| G. ultimum | OTU_10 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.62 ± 0.38 a | 0.00 ± 0.00 b | ||
| Globisporangium attrantheridium | OTU_279 | 0.03 ± 0.06 | 0.05 ± 0.12 | 9.68 ± 8.27 a | 0.58 ± 1.08 b | ||
| Globisporangium apiculatum | OTU_53 | 0.00 ± 0.00 | 0.05 ± 0.12 | 0.23 ± 0.32 | 7.55 ± 14.50 | ||
| Globisporangium heterothallicum | OTU_9 | 0.00 ± 0.00 | 0.00 ± 0.00 | 6.50 ± 10.47 | 0.58 ± 1.16 | ||
| Myzocytiopsis | M. subuliformis | OTU_5 | 0.00 ± 0.00 a | 53.65 ± 40.97 b | 0.00 ± 0.00 | 0.74 ± 1.48 | |
| Peronospora | P. potentillae-anserinae | OTU_2 | 53.10 ± 33.35 a | 0.23 ± 0.28 b | 23.97 ± 41.95 | 1.00 ± 1.75 | |
| E. butleri | OTU_3 | 1.19 ± 1.23 | 20.80 ± 24.55 | 3.97 ± 3.02 a | 0.26 ± 0.52 b | ||
| Pythiogeton | P. ramosum | OTU_349 | 2.42 ± 3.17 | 0.15 ± 0.14 | 1.88 ± 1.56 a | 0.00 ± 0.00 b | |
| Pythium | Pythium acanthicum | OTU_14 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.31 ± 0.69 | 0.74 ± 1.48 | |
| Pythium monospermum | OTU_28 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.03 ± 0.06 | 0.61 ± 0.80 | ||
| Phytophthora | Phytophthora andina | OTU_11 | 0.71 ± 1.42 | 0.46 ± 1.04 | 7.33 ± 10.49 | 0.16 ± 0.24 | |
| Phytophthora cinnamomi | OTU_34 | 0.00 ± 0.00 | 0.00 ± 0.00 | 1.11 ± 1.90 | 0.06 ± 0.13 | ||
| Phytophthora bisheria | OTU_7 | 12.94 ± 17.18 | 2.81 ± 6.29 | 0.03 ± 0.06 | 24.81 ± 49.01 | ||
OTU operational taxonomic unit
Mean ± SD. Letters indicate significant differences between treatments within site and genus, t-test, p < 0.05 and n = 4 for HU and SG and n = 5 for HG and SU
Relative abundances (>0.5%) of oomycete genera/species detected in the rhizosphere of R. corymbifera ‘Laxa’ grown for eight weeks in untreated (U) and γ-irradiated (G) RRD soil from two sites (S and H)
| Phylum . | Genus . | Species . | OTU_ID . | Site H . | Site S . | ||
|---|---|---|---|---|---|---|---|
| HU . | HG . | SU . | SG . | ||||
| Oomycetes | Globisporangium | Globisporangium mamillatum | OTU_1 | 20.13 ± 31.71 | 7.12 ± 7.89 | 29.70 ± 19.64 | 60.81 ± 42.44 |
| G. ultimum | OTU_10 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.62 ± 0.38 a | 0.00 ± 0.00 b | ||
| Globisporangium attrantheridium | OTU_279 | 0.03 ± 0.06 | 0.05 ± 0.12 | 9.68 ± 8.27 a | 0.58 ± 1.08 b | ||
| Globisporangium apiculatum | OTU_53 | 0.00 ± 0.00 | 0.05 ± 0.12 | 0.23 ± 0.32 | 7.55 ± 14.50 | ||
| Globisporangium heterothallicum | OTU_9 | 0.00 ± 0.00 | 0.00 ± 0.00 | 6.50 ± 10.47 | 0.58 ± 1.16 | ||
| Myzocytiopsis | M. subuliformis | OTU_5 | 0.00 ± 0.00 a | 53.65 ± 40.97 b | 0.00 ± 0.00 | 0.74 ± 1.48 | |
| Peronospora | P. potentillae-anserinae | OTU_2 | 53.10 ± 33.35 a | 0.23 ± 0.28 b | 23.97 ± 41.95 | 1.00 ± 1.75 | |
| E. butleri | OTU_3 | 1.19 ± 1.23 | 20.80 ± 24.55 | 3.97 ± 3.02 a | 0.26 ± 0.52 b | ||
| Pythiogeton | P. ramosum | OTU_349 | 2.42 ± 3.17 | 0.15 ± 0.14 | 1.88 ± 1.56 a | 0.00 ± 0.00 b | |
| Pythium | Pythium acanthicum | OTU_14 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.31 ± 0.69 | 0.74 ± 1.48 | |
| Pythium monospermum | OTU_28 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.03 ± 0.06 | 0.61 ± 0.80 | ||
| Phytophthora | Phytophthora andina | OTU_11 | 0.71 ± 1.42 | 0.46 ± 1.04 | 7.33 ± 10.49 | 0.16 ± 0.24 | |
| Phytophthora cinnamomi | OTU_34 | 0.00 ± 0.00 | 0.00 ± 0.00 | 1.11 ± 1.90 | 0.06 ± 0.13 | ||
| Phytophthora bisheria | OTU_7 | 12.94 ± 17.18 | 2.81 ± 6.29 | 0.03 ± 0.06 | 24.81 ± 49.01 | ||
| Phylum . | Genus . | Species . | OTU_ID . | Site H . | Site S . | ||
|---|---|---|---|---|---|---|---|
| HU . | HG . | SU . | SG . | ||||
| Oomycetes | Globisporangium | Globisporangium mamillatum | OTU_1 | 20.13 ± 31.71 | 7.12 ± 7.89 | 29.70 ± 19.64 | 60.81 ± 42.44 |
| G. ultimum | OTU_10 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.62 ± 0.38 a | 0.00 ± 0.00 b | ||
| Globisporangium attrantheridium | OTU_279 | 0.03 ± 0.06 | 0.05 ± 0.12 | 9.68 ± 8.27 a | 0.58 ± 1.08 b | ||
| Globisporangium apiculatum | OTU_53 | 0.00 ± 0.00 | 0.05 ± 0.12 | 0.23 ± 0.32 | 7.55 ± 14.50 | ||
| Globisporangium heterothallicum | OTU_9 | 0.00 ± 0.00 | 0.00 ± 0.00 | 6.50 ± 10.47 | 0.58 ± 1.16 | ||
| Myzocytiopsis | M. subuliformis | OTU_5 | 0.00 ± 0.00 a | 53.65 ± 40.97 b | 0.00 ± 0.00 | 0.74 ± 1.48 | |
| Peronospora | P. potentillae-anserinae | OTU_2 | 53.10 ± 33.35 a | 0.23 ± 0.28 b | 23.97 ± 41.95 | 1.00 ± 1.75 | |
| E. butleri | OTU_3 | 1.19 ± 1.23 | 20.80 ± 24.55 | 3.97 ± 3.02 a | 0.26 ± 0.52 b | ||
| Pythiogeton | P. ramosum | OTU_349 | 2.42 ± 3.17 | 0.15 ± 0.14 | 1.88 ± 1.56 a | 0.00 ± 0.00 b | |
| Pythium | Pythium acanthicum | OTU_14 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.31 ± 0.69 | 0.74 ± 1.48 | |
| Pythium monospermum | OTU_28 | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.03 ± 0.06 | 0.61 ± 0.80 | ||
| Phytophthora | Phytophthora andina | OTU_11 | 0.71 ± 1.42 | 0.46 ± 1.04 | 7.33 ± 10.49 | 0.16 ± 0.24 | |
| Phytophthora cinnamomi | OTU_34 | 0.00 ± 0.00 | 0.00 ± 0.00 | 1.11 ± 1.90 | 0.06 ± 0.13 | ||
| Phytophthora bisheria | OTU_7 | 12.94 ± 17.18 | 2.81 ± 6.29 | 0.03 ± 0.06 | 24.81 ± 49.01 | ||
OTU operational taxonomic unit
Mean ± SD. Letters indicate significant differences between treatments within site and genus, t-test, p < 0.05 and n = 4 for HU and SG and n = 5 for HG and SU
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