Details of the most significant single nucleotide polymorphism (SNP) markers associated with resistance to Phytophthora cactorum identified in the preliminary genome-wide association study of 114 individuals, identified by both PLINK45 and TASSEL46 analyses
| Fragaria × ananassa linkage group . | Position on Fragaria vesca v1.1 (bp) . | Most significant SNP probe . | PLINK45 . | TASSEL46 . | IStraw35 marker? . | ||
|---|---|---|---|---|---|---|---|
| . | . | . | Raw p value . | FDR BH p value . | Raw p value . | FDR BH p value . | . |
| LG5D | 2 411 572 | Affx-88859864 | 1.06e−05 | 0.0956 | 3.24e−06 | 0.0673 | No |
| LG7A | 14 759 809 | Affx-88897773 | 1.51e−06 | 0.0271 | 2.89e−05 | 0.1708 | Yes |
| 14 946,159 | Affx-88897860 | 1.41e−06 | 0.0271 | 2.97e−06 | 0.0673 | Yes | |
| LG7D | 19,557,035 | Affx-88900641 | 6.98e−06 | 0.0839 | 9.72e−05 | 0.2734 | Yes |
| Fragaria × ananassa linkage group . | Position on Fragaria vesca v1.1 (bp) . | Most significant SNP probe . | PLINK45 . | TASSEL46 . | IStraw35 marker? . | ||
|---|---|---|---|---|---|---|---|
| . | . | . | Raw p value . | FDR BH p value . | Raw p value . | FDR BH p value . | . |
| LG5D | 2 411 572 | Affx-88859864 | 1.06e−05 | 0.0956 | 3.24e−06 | 0.0673 | No |
| LG7A | 14 759 809 | Affx-88897773 | 1.51e−06 | 0.0271 | 2.89e−05 | 0.1708 | Yes |
| 14 946,159 | Affx-88897860 | 1.41e−06 | 0.0271 | 2.97e−06 | 0.0673 | Yes | |
| LG7D | 19,557,035 | Affx-88900641 | 6.98e−06 | 0.0839 | 9.72e−05 | 0.2734 | Yes |
Raw p values and false-discovery rate Benjamini–Hochberg (FDR BH) p values are shown
Details of the most significant single nucleotide polymorphism (SNP) markers associated with resistance to Phytophthora cactorum identified in the preliminary genome-wide association study of 114 individuals, identified by both PLINK45 and TASSEL46 analyses
| Fragaria × ananassa linkage group . | Position on Fragaria vesca v1.1 (bp) . | Most significant SNP probe . | PLINK45 . | TASSEL46 . | IStraw35 marker? . | ||
|---|---|---|---|---|---|---|---|
| . | . | . | Raw p value . | FDR BH p value . | Raw p value . | FDR BH p value . | . |
| LG5D | 2 411 572 | Affx-88859864 | 1.06e−05 | 0.0956 | 3.24e−06 | 0.0673 | No |
| LG7A | 14 759 809 | Affx-88897773 | 1.51e−06 | 0.0271 | 2.89e−05 | 0.1708 | Yes |
| 14 946,159 | Affx-88897860 | 1.41e−06 | 0.0271 | 2.97e−06 | 0.0673 | Yes | |
| LG7D | 19,557,035 | Affx-88900641 | 6.98e−06 | 0.0839 | 9.72e−05 | 0.2734 | Yes |
| Fragaria × ananassa linkage group . | Position on Fragaria vesca v1.1 (bp) . | Most significant SNP probe . | PLINK45 . | TASSEL46 . | IStraw35 marker? . | ||
|---|---|---|---|---|---|---|---|
| . | . | . | Raw p value . | FDR BH p value . | Raw p value . | FDR BH p value . | . |
| LG5D | 2 411 572 | Affx-88859864 | 1.06e−05 | 0.0956 | 3.24e−06 | 0.0673 | No |
| LG7A | 14 759 809 | Affx-88897773 | 1.51e−06 | 0.0271 | 2.89e−05 | 0.1708 | Yes |
| 14 946,159 | Affx-88897860 | 1.41e−06 | 0.0271 | 2.97e−06 | 0.0673 | Yes | |
| LG7D | 19,557,035 | Affx-88900641 | 6.98e−06 | 0.0839 | 9.72e−05 | 0.2734 | Yes |
Raw p values and false-discovery rate Benjamini–Hochberg (FDR BH) p values are shown
This PDF is available to Subscribers Only
View Article Abstract & Purchase OptionsFor full access to this pdf, sign in to an existing account, or purchase an annual subscription.
