Table 3 Open in new tab The median ARI...

	Parameters	Median ARI
Exp1	0.1	0.1	0	0	0	0.85	0.19	0.96	0.92
Exp2	0.2	0.1	0.99	0.43	0.01	0.95	0.75	0.95	1
Exp3	0.1	0.2	0	0	0	0.89	0.39	0.92	1
Exp4	0.2	0.2	1	0.47	0.01	0.99	0.73	1	1

	Parameters	Median ARI
Exp1	0.1	0.1	0	0	0	0.85	0.19	0.96	0.92
Exp2	0.2	0.1	0.99	0.43	0.01	0.95	0.75	0.95	1
Exp3	0.1	0.2	0	0	0	0.89	0.39	0.92	1
Exp4	0.2	0.2	1	0.47	0.01	0.99	0.73	1	1

Table 3

The median ARI values for SC3, CC, PINS, SNF, Seurat, SIMLR, ROGUE-SC3 and REBET-SC3 of simulated datasets with different dispersion between clusters. Eight datasets were simulated for each parameter setting^*

	Parameters		Median ARI
	de. prob	de. facLoc	SC3	CC	PINS	SNF	Seurat	SIMLR	ROGUE -SC3	REBET -SC3
Exp1	0.1	0.1	0	0	0	0	0.85	0.19	0.96	0.92
Exp2	0.2	0.1	0	0.99	0.43	0.01	0.95	0.75	0.95	1
Exp3	0.1	0.2	0	0	0	0	0.89	0.39	0.92	1
Exp4	0.2	0.2	0	1	0.47	0.01	0.99	0.73	1	1

	Parameters		Median ARI
	de. prob	de. facLoc	SC3	CC	PINS	SNF	Seurat	SIMLR	ROGUE -SC3	REBET -SC3
Exp1	0.1	0.1	0	0	0	0	0.85	0.19	0.96	0.92
Exp2	0.2	0.1	0	0.99	0.43	0.01	0.95	0.75	0.95	1
Exp3	0.1	0.2	0	0	0	0	0.89	0.39	0.92	1
Exp4	0.2	0.2	0	1	0.47	0.01	0.99	0.73	1	1

^*The method with the highest ARI in each row is in boldface.

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