| ML Distance of AA Sequences . | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| . | Alignment Lengtha . | sRNA Regionb . | Non-sRNA Region of Protein . | ΔGc (BC/DC)d . | No. of Compensatory Changes (BC/DC) . | No. of Aligned Carsonella Sequences . | ΔG (ALL)e . | No. of Compensatory Changes (ALL) . | No. of Shared Pairs . | % of Shared Pairs . |
| aroC | 89 | 0.197 | 0.208 | −29.4 | 2 | 11 | −7.6 | 1 | 0 | 0% |
| atpA_1 | 111 | 0.132 | 0.229 | −42.6 | 5 | 11 | −22.8 | 4 | 18 | 53% |
| atpA_2 | 178 | 0.117 | 0.238 | −63.4 | 5 | 11 | −30.1 | 5 | 19 | 36% |
| atpD | 240 | 0.074 | 0.107 | −90.2 | 6 | 11 | −55.4 | 7 | 39 | 48% |
| carA-carB | 329 | 0.487 | 0.458 | −126.8 | 9 | 9 | −51.3 | 10 | 14 | 13% |
| carB | 107 | 0.437 | 0.312 | −26.8 | 2 | 9 | −6.3 | 5 | 5 | 15% |
| clpX | 138 | 0.170 | 0.220 | −42.2 | 6 | 11 | −13.2 | 2 | 5 | 11% |
| gidA | 150 | 0.373 | 0.231 | −45.0 | 5 | 11 | −13.7 | 4 | 0 | 0% |
| grpE | 145 | 0.361 | 0.569 | −44.1 | 6 | 11 | −10.0 | 6 | 5 | 11% |
| leuC | 193 | 0.123 | 0.265 | −65.4 | 7 | 11 | −30.3 | 7 | 0 | 0% |
| prfA | 143 | 0.122 | 0.435 | −37.3 | 2 | 11 | −18.1 | 2 | 16 | 39% |
| ML Distance of AA Sequences . | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| . | Alignment Lengtha . | sRNA Regionb . | Non-sRNA Region of Protein . | ΔGc (BC/DC)d . | No. of Compensatory Changes (BC/DC) . | No. of Aligned Carsonella Sequences . | ΔG (ALL)e . | No. of Compensatory Changes (ALL) . | No. of Shared Pairs . | % of Shared Pairs . |
| aroC | 89 | 0.197 | 0.208 | −29.4 | 2 | 11 | −7.6 | 1 | 0 | 0% |
| atpA_1 | 111 | 0.132 | 0.229 | −42.6 | 5 | 11 | −22.8 | 4 | 18 | 53% |
| atpA_2 | 178 | 0.117 | 0.238 | −63.4 | 5 | 11 | −30.1 | 5 | 19 | 36% |
| atpD | 240 | 0.074 | 0.107 | −90.2 | 6 | 11 | −55.4 | 7 | 39 | 48% |
| carA-carB | 329 | 0.487 | 0.458 | −126.8 | 9 | 9 | −51.3 | 10 | 14 | 13% |
| carB | 107 | 0.437 | 0.312 | −26.8 | 2 | 9 | −6.3 | 5 | 5 | 15% |
| clpX | 138 | 0.170 | 0.220 | −42.2 | 6 | 11 | −13.2 | 2 | 5 | 11% |
| gidA | 150 | 0.373 | 0.231 | −45.0 | 5 | 11 | −13.7 | 4 | 0 | 0% |
| grpE | 145 | 0.361 | 0.569 | −44.1 | 6 | 11 | −10.0 | 6 | 5 | 11% |
| leuC | 193 | 0.123 | 0.265 | −65.4 | 7 | 11 | −30.3 | 7 | 0 | 0% |
| prfA | 143 | 0.122 | 0.435 | −37.3 | 2 | 11 | −18.1 | 2 | 16 | 39% |
Length of overlapping sRNA region with additional 15 nt upstream and downstream in Carsonella-BC and Carsonella-DC.
Values in italics are significantly more conserved than surrounding protein coding region in one-tailed t-test, P < 0.01.
Thermodynamic ensemble prediction (kcal/mol) from RNAalifold.
BC/DC = Carsonella-BC and Carsonella-DC.
ALL = all aligned Carsonella strains.
| ML Distance of AA Sequences . | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| . | Alignment Lengtha . | sRNA Regionb . | Non-sRNA Region of Protein . | ΔGc (BC/DC)d . | No. of Compensatory Changes (BC/DC) . | No. of Aligned Carsonella Sequences . | ΔG (ALL)e . | No. of Compensatory Changes (ALL) . | No. of Shared Pairs . | % of Shared Pairs . |
| aroC | 89 | 0.197 | 0.208 | −29.4 | 2 | 11 | −7.6 | 1 | 0 | 0% |
| atpA_1 | 111 | 0.132 | 0.229 | −42.6 | 5 | 11 | −22.8 | 4 | 18 | 53% |
| atpA_2 | 178 | 0.117 | 0.238 | −63.4 | 5 | 11 | −30.1 | 5 | 19 | 36% |
| atpD | 240 | 0.074 | 0.107 | −90.2 | 6 | 11 | −55.4 | 7 | 39 | 48% |
| carA-carB | 329 | 0.487 | 0.458 | −126.8 | 9 | 9 | −51.3 | 10 | 14 | 13% |
| carB | 107 | 0.437 | 0.312 | −26.8 | 2 | 9 | −6.3 | 5 | 5 | 15% |
| clpX | 138 | 0.170 | 0.220 | −42.2 | 6 | 11 | −13.2 | 2 | 5 | 11% |
| gidA | 150 | 0.373 | 0.231 | −45.0 | 5 | 11 | −13.7 | 4 | 0 | 0% |
| grpE | 145 | 0.361 | 0.569 | −44.1 | 6 | 11 | −10.0 | 6 | 5 | 11% |
| leuC | 193 | 0.123 | 0.265 | −65.4 | 7 | 11 | −30.3 | 7 | 0 | 0% |
| prfA | 143 | 0.122 | 0.435 | −37.3 | 2 | 11 | −18.1 | 2 | 16 | 39% |
| ML Distance of AA Sequences . | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| . | Alignment Lengtha . | sRNA Regionb . | Non-sRNA Region of Protein . | ΔGc (BC/DC)d . | No. of Compensatory Changes (BC/DC) . | No. of Aligned Carsonella Sequences . | ΔG (ALL)e . | No. of Compensatory Changes (ALL) . | No. of Shared Pairs . | % of Shared Pairs . |
| aroC | 89 | 0.197 | 0.208 | −29.4 | 2 | 11 | −7.6 | 1 | 0 | 0% |
| atpA_1 | 111 | 0.132 | 0.229 | −42.6 | 5 | 11 | −22.8 | 4 | 18 | 53% |
| atpA_2 | 178 | 0.117 | 0.238 | −63.4 | 5 | 11 | −30.1 | 5 | 19 | 36% |
| atpD | 240 | 0.074 | 0.107 | −90.2 | 6 | 11 | −55.4 | 7 | 39 | 48% |
| carA-carB | 329 | 0.487 | 0.458 | −126.8 | 9 | 9 | −51.3 | 10 | 14 | 13% |
| carB | 107 | 0.437 | 0.312 | −26.8 | 2 | 9 | −6.3 | 5 | 5 | 15% |
| clpX | 138 | 0.170 | 0.220 | −42.2 | 6 | 11 | −13.2 | 2 | 5 | 11% |
| gidA | 150 | 0.373 | 0.231 | −45.0 | 5 | 11 | −13.7 | 4 | 0 | 0% |
| grpE | 145 | 0.361 | 0.569 | −44.1 | 6 | 11 | −10.0 | 6 | 5 | 11% |
| leuC | 193 | 0.123 | 0.265 | −65.4 | 7 | 11 | −30.3 | 7 | 0 | 0% |
| prfA | 143 | 0.122 | 0.435 | −37.3 | 2 | 11 | −18.1 | 2 | 16 | 39% |
Length of overlapping sRNA region with additional 15 nt upstream and downstream in Carsonella-BC and Carsonella-DC.
Values in italics are significantly more conserved than surrounding protein coding region in one-tailed t-test, P < 0.01.
Thermodynamic ensemble prediction (kcal/mol) from RNAalifold.
BC/DC = Carsonella-BC and Carsonella-DC.
ALL = all aligned Carsonella strains.
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