Table 1.

DNA constructs tested for nucleosome assembly and crystallization

ConstructaGenerationbBasiscNRLdSharedePairedfDiffractgTerminih
165a1NCP16520noPstI
167a1NCP16722noPstI
169a1NCP16924yesPstI
169ak1NCP16924yesKpnI
169an1NCP16924yesKpnI/SacI
171a1NCP17126noPstI
173a1NCP17328noPstI
175a1NCP17530noKpnI
177a1NCP17732noPstI
338b2169a1692424yesEcoRV
343c3338b171.52924yesKpnI
345c3338b172.52926noKpnI
347c3338b173.52928noKpnI
349c3338b174.52930yesiKpnI
351c3338b175.52932noKpnI
353c3338b176.52934yesKpnI
357d4349c178.52938noKpnI
359d4349c179.52940noKpnI
361d4349c180.52942noKpnI
351e5349c175.53130noKpnI
353e5351c176.53132yesKpnI
355e5353c177.53134yesiKpnI
357e5353c178.53136noKpnI
354f6353e1773232yesKpnI
ConstructaGenerationbBasiscNRLdSharedePairedfDiffractgTerminih
165a1NCP16520noPstI
167a1NCP16722noPstI
169a1NCP16924yesPstI
169ak1NCP16924yesKpnI
169an1NCP16924yesKpnI/SacI
171a1NCP17126noPstI
173a1NCP17328noPstI
175a1NCP17530noKpnI
177a1NCP17732noPstI
338b2169a1692424yesEcoRV
343c3338b171.52924yesKpnI
345c3338b172.52926noKpnI
347c3338b173.52928noKpnI
349c3338b174.52930yesiKpnI
351c3338b175.52932noKpnI
353c3338b176.52934yesKpnI
357d4349c178.52938noKpnI
359d4349c179.52940noKpnI
361d4349c180.52942noKpnI
351e5349c175.53130noKpnI
353e5351c176.53132yesKpnI
355e5353c177.53134yesiKpnI
357e5353c178.53136noKpnI
354f6353e1773232yesKpnI

aConstruct identity.

bGeneration number in design process.

cBasis upon which construct was designed.

dNucleosome repeat length (bp).

eLength of the connecting linker DNA (bp) in the dinucleosome constructs.

fLength of the linker DNA (bp) formed by annealing of the termini.

gX-ray data set obtained to a resolution of at least 5.5 Å.

hRestriction enzyme(s) used to generate termini (4-nucleotide overhangs except for EcoRV, which generates blunt ends).

iFrom Adhireksan et al. (27).

Table 1.

DNA constructs tested for nucleosome assembly and crystallization

ConstructaGenerationbBasiscNRLdSharedePairedfDiffractgTerminih
165a1NCP16520noPstI
167a1NCP16722noPstI
169a1NCP16924yesPstI
169ak1NCP16924yesKpnI
169an1NCP16924yesKpnI/SacI
171a1NCP17126noPstI
173a1NCP17328noPstI
175a1NCP17530noKpnI
177a1NCP17732noPstI
338b2169a1692424yesEcoRV
343c3338b171.52924yesKpnI
345c3338b172.52926noKpnI
347c3338b173.52928noKpnI
349c3338b174.52930yesiKpnI
351c3338b175.52932noKpnI
353c3338b176.52934yesKpnI
357d4349c178.52938noKpnI
359d4349c179.52940noKpnI
361d4349c180.52942noKpnI
351e5349c175.53130noKpnI
353e5351c176.53132yesKpnI
355e5353c177.53134yesiKpnI
357e5353c178.53136noKpnI
354f6353e1773232yesKpnI
ConstructaGenerationbBasiscNRLdSharedePairedfDiffractgTerminih
165a1NCP16520noPstI
167a1NCP16722noPstI
169a1NCP16924yesPstI
169ak1NCP16924yesKpnI
169an1NCP16924yesKpnI/SacI
171a1NCP17126noPstI
173a1NCP17328noPstI
175a1NCP17530noKpnI
177a1NCP17732noPstI
338b2169a1692424yesEcoRV
343c3338b171.52924yesKpnI
345c3338b172.52926noKpnI
347c3338b173.52928noKpnI
349c3338b174.52930yesiKpnI
351c3338b175.52932noKpnI
353c3338b176.52934yesKpnI
357d4349c178.52938noKpnI
359d4349c179.52940noKpnI
361d4349c180.52942noKpnI
351e5349c175.53130noKpnI
353e5351c176.53132yesKpnI
355e5353c177.53134yesiKpnI
357e5353c178.53136noKpnI
354f6353e1773232yesKpnI

aConstruct identity.

bGeneration number in design process.

cBasis upon which construct was designed.

dNucleosome repeat length (bp).

eLength of the connecting linker DNA (bp) in the dinucleosome constructs.

fLength of the linker DNA (bp) formed by annealing of the termini.

gX-ray data set obtained to a resolution of at least 5.5 Å.

hRestriction enzyme(s) used to generate termini (4-nucleotide overhangs except for EcoRV, which generates blunt ends).

iFrom Adhireksan et al. (27).

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