Name . | Sequence . |
---|---|
IS911 | GAAATGGAGAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT |
IS911_if | GAAATGGAGAATGAAATATTAAACAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT |
IS3 | CGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAG |
IS3_if | CGGGATGAAGAGCTGGCTATCCTCCACAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCT |
dnaX | CAGGGAGCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaX_if | CAGGGAGCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaXoSD | CCACCACCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaXoSD_if | CCACCACCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
prfB | GTTCTTAGGGGGTATCTTTGACTACGAC |
prfB_if | GTTCTTAGGGGGTATCTTGACTACGAC |
prfBoSD | GTTCTTCACCACTATCTTTGACTACGAC |
prfBoSD_if | GTTCTTCACCACTATCTTGACTACGAC |
TAG readthrough | ATGGGTGTCTAGGGCCCAGAG (corresponding constructs with TGA and TAA) |
wt SD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAAGGAGGTCCATTATG |
no SD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAACCTCCTCCATTATG |
oSD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGCACCACAATCCATTATG |
oSD without SL | TAATAATAACCTGGGCAGGCCATGCCCGGGTCTGCCCGTATTTCGCGCACCACAATCCATTATG |
Name . | Sequence . |
---|---|
IS911 | GAAATGGAGAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT |
IS911_if | GAAATGGAGAATGAAATATTAAACAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT |
IS3 | CGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAG |
IS3_if | CGGGATGAAGAGCTGGCTATCCTCCACAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCT |
dnaX | CAGGGAGCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaX_if | CAGGGAGCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaXoSD | CCACCACCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaXoSD_if | CCACCACCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
prfB | GTTCTTAGGGGGTATCTTTGACTACGAC |
prfB_if | GTTCTTAGGGGGTATCTTGACTACGAC |
prfBoSD | GTTCTTCACCACTATCTTTGACTACGAC |
prfBoSD_if | GTTCTTCACCACTATCTTGACTACGAC |
TAG readthrough | ATGGGTGTCTAGGGCCCAGAG (corresponding constructs with TGA and TAA) |
wt SD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAAGGAGGTCCATTATG |
no SD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAACCTCCTCCATTATG |
oSD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGCACCACAATCCATTATG |
oSD without SL | TAATAATAACCTGGGCAGGCCATGCCCGGGTCTGCCCGTATTTCGCGCACCACAATCCATTATG |
For frameshifting sites, the slippery sequence is underlined. In-frame control sequences corresponding to each target sequence are indicated by ‘_if’. For −1 frameshifting, a C was added within the slippery sequence; for +1 frameshifting, the T of the TGA stop codon was removed; and for stop codon readthrough, the stop codon was replaced by AAG. The dnaX and prfB frameshifting sites were also obtained with a specific CACCAC oRibo-T SD sequence (called oSD) upstream from the slippery sequence (dnaXoSD and prfBoSD, respectively). The SmaI site used for stem-loop (SL) cloning is indicated in bold typeface. To allow translation of the F-luc gene after frameshifting, the UGA stop codon in the −1 frame of the dnaX frameshifting site was changed to an UGU codon.
Name . | Sequence . |
---|---|
IS911 | GAAATGGAGAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT |
IS911_if | GAAATGGAGAATGAAATATTAAACAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT |
IS3 | CGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAG |
IS3_if | CGGGATGAAGAGCTGGCTATCCTCCACAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCT |
dnaX | CAGGGAGCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaX_if | CAGGGAGCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaXoSD | CCACCACCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaXoSD_if | CCACCACCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
prfB | GTTCTTAGGGGGTATCTTTGACTACGAC |
prfB_if | GTTCTTAGGGGGTATCTTGACTACGAC |
prfBoSD | GTTCTTCACCACTATCTTTGACTACGAC |
prfBoSD_if | GTTCTTCACCACTATCTTGACTACGAC |
TAG readthrough | ATGGGTGTCTAGGGCCCAGAG (corresponding constructs with TGA and TAA) |
wt SD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAAGGAGGTCCATTATG |
no SD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAACCTCCTCCATTATG |
oSD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGCACCACAATCCATTATG |
oSD without SL | TAATAATAACCTGGGCAGGCCATGCCCGGGTCTGCCCGTATTTCGCGCACCACAATCCATTATG |
Name . | Sequence . |
---|---|
IS911 | GAAATGGAGAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT |
IS911_if | GAAATGGAGAATGAAATATTAAACAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT |
IS3 | CGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAG |
IS3_if | CGGGATGAAGAGCTGGCTATCCTCCACAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCT |
dnaX | CAGGGAGCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaX_if | CAGGGAGCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaXoSD | CCACCACCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
dnaXoSD_if | CCACCACCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA |
prfB | GTTCTTAGGGGGTATCTTTGACTACGAC |
prfB_if | GTTCTTAGGGGGTATCTTGACTACGAC |
prfBoSD | GTTCTTCACCACTATCTTTGACTACGAC |
prfBoSD_if | GTTCTTCACCACTATCTTGACTACGAC |
TAG readthrough | ATGGGTGTCTAGGGCCCAGAG (corresponding constructs with TGA and TAA) |
wt SD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAAGGAGGTCCATTATG |
no SD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAACCTCCTCCATTATG |
oSD | TAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGCACCACAATCCATTATG |
oSD without SL | TAATAATAACCTGGGCAGGCCATGCCCGGGTCTGCCCGTATTTCGCGCACCACAATCCATTATG |
For frameshifting sites, the slippery sequence is underlined. In-frame control sequences corresponding to each target sequence are indicated by ‘_if’. For −1 frameshifting, a C was added within the slippery sequence; for +1 frameshifting, the T of the TGA stop codon was removed; and for stop codon readthrough, the stop codon was replaced by AAG. The dnaX and prfB frameshifting sites were also obtained with a specific CACCAC oRibo-T SD sequence (called oSD) upstream from the slippery sequence (dnaXoSD and prfBoSD, respectively). The SmaI site used for stem-loop (SL) cloning is indicated in bold typeface. To allow translation of the F-luc gene after frameshifting, the UGA stop codon in the −1 frame of the dnaX frameshifting site was changed to an UGU codon.
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