Table 1.

Target sequences used in the study

NameSequence
IS911GAAATGGAGAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT
IS911_ifGAAATGGAGAATGAAATATTAAACAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT
IS3CGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAG
IS3_ifCGGGATGAAGAGCTGGCTATCCTCCACAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCT
dnaXCAGGGAGCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaX_ifCAGGGAGCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaXoSDCCACCACCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaXoSD_ifCCACCACCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
prfBGTTCTTAGGGGGTATCTTTGACTACGAC
prfB_ifGTTCTTAGGGGGTATCTTGACTACGAC
prfBoSDGTTCTTCACCACTATCTTTGACTACGAC
prfBoSD_ifGTTCTTCACCACTATCTTGACTACGAC
TAG readthroughATGGGTGTCTAGGGCCCAGAG (corresponding constructs with TGA and TAA)
wt SDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAAGGAGGTCCATTATG
no SDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAACCTCCTCCATTATG
oSDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGCACCACAATCCATTATG
oSD without SLTAATAATAACCTGGGCAGGCCATGCCCGGGTCTGCCCGTATTTCGCGCACCACAATCCATTATG
NameSequence
IS911GAAATGGAGAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT
IS911_ifGAAATGGAGAATGAAATATTAAACAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT
IS3CGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAG
IS3_ifCGGGATGAAGAGCTGGCTATCCTCCACAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCT
dnaXCAGGGAGCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaX_ifCAGGGAGCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaXoSDCCACCACCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaXoSD_ifCCACCACCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
prfBGTTCTTAGGGGGTATCTTTGACTACGAC
prfB_ifGTTCTTAGGGGGTATCTTGACTACGAC
prfBoSDGTTCTTCACCACTATCTTTGACTACGAC
prfBoSD_ifGTTCTTCACCACTATCTTGACTACGAC
TAG readthroughATGGGTGTCTAGGGCCCAGAG (corresponding constructs with TGA and TAA)
wt SDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAAGGAGGTCCATTATG
no SDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAACCTCCTCCATTATG
oSDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGCACCACAATCCATTATG
oSD without SLTAATAATAACCTGGGCAGGCCATGCCCGGGTCTGCCCGTATTTCGCGCACCACAATCCATTATG

For frameshifting sites, the slippery sequence is underlined. In-frame control sequences corresponding to each target sequence are indicated by ‘_if’. For −1 frameshifting, a C was added within the slippery sequence; for +1 frameshifting, the T of the TGA stop codon was removed; and for stop codon readthrough, the stop codon was replaced by AAG. The dnaX and prfB frameshifting sites were also obtained with a specific CACCAC oRibo-T SD sequence (called oSD) upstream from the slippery sequence (dnaXoSD and prfBoSD, respectively). The SmaI site used for stem-loop (SL) cloning is indicated in bold typeface. To allow translation of the F-luc gene after frameshifting, the UGA stop codon in the −1 frame of the dnaX frameshifting site was changed to an UGU codon.

Table 1.

Target sequences used in the study

NameSequence
IS911GAAATGGAGAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT
IS911_ifGAAATGGAGAATGAAATATTAAACAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT
IS3CGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAG
IS3_ifCGGGATGAAGAGCTGGCTATCCTCCACAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCT
dnaXCAGGGAGCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaX_ifCAGGGAGCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaXoSDCCACCACCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaXoSD_ifCCACCACCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
prfBGTTCTTAGGGGGTATCTTTGACTACGAC
prfB_ifGTTCTTAGGGGGTATCTTGACTACGAC
prfBoSDGTTCTTCACCACTATCTTTGACTACGAC
prfBoSD_ifGTTCTTCACCACTATCTTGACTACGAC
TAG readthroughATGGGTGTCTAGGGCCCAGAG (corresponding constructs with TGA and TAA)
wt SDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAAGGAGGTCCATTATG
no SDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAACCTCCTCCATTATG
oSDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGCACCACAATCCATTATG
oSD without SLTAATAATAACCTGGGCAGGCCATGCCCGGGTCTGCCCGTATTTCGCGCACCACAATCCATTATG
NameSequence
IS911GAAATGGAGAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT
IS911_ifGAAATGGAGAATGAAATATTAAACAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGAGCGCATTATCCT
IS3CGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAG
IS3_ifCGGGATGAAGAGCTGGCTATCCTCCACAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCT
dnaXCAGGGAGCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaX_ifCAGGGAGCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaXoSDCCACCACCAACCAAAGCAAAAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
dnaXoSD_ifCCACCACCAACCAAAGCAAACAAAGAGTGTACCGGCAGCCGCTACCCGCGCGCGGCCGGTGAA
prfBGTTCTTAGGGGGTATCTTTGACTACGAC
prfB_ifGTTCTTAGGGGGTATCTTGACTACGAC
prfBoSDGTTCTTCACCACTATCTTTGACTACGAC
prfBoSD_ifGTTCTTCACCACTATCTTGACTACGAC
TAG readthroughATGGGTGTCTAGGGCCCAGAG (corresponding constructs with TGA and TAA)
wt SDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAAGGAGGTCCATTATG
no SDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGTAACCTCCTCCATTATG
oSDTAATAATAACCTGGGCAGGCCATGTCTGCCCGTATTTCGCGCACCACAATCCATTATG
oSD without SLTAATAATAACCTGGGCAGGCCATGCCCGGGTCTGCCCGTATTTCGCGCACCACAATCCATTATG

For frameshifting sites, the slippery sequence is underlined. In-frame control sequences corresponding to each target sequence are indicated by ‘_if’. For −1 frameshifting, a C was added within the slippery sequence; for +1 frameshifting, the T of the TGA stop codon was removed; and for stop codon readthrough, the stop codon was replaced by AAG. The dnaX and prfB frameshifting sites were also obtained with a specific CACCAC oRibo-T SD sequence (called oSD) upstream from the slippery sequence (dnaXoSD and prfBoSD, respectively). The SmaI site used for stem-loop (SL) cloning is indicated in bold typeface. To allow translation of the F-luc gene after frameshifting, the UGA stop codon in the −1 frame of the dnaX frameshifting site was changed to an UGU codon.

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