Table 3 Open in new tab Average AUPR... | Oxford Academic

Table 3

Open in new tab

Average AUPR over all the diseases and AUPRs of 10 well-characterized disease*

Disease name	VADLP	CNNLDA	AUPR Ping’s method	SIMCLDA	LDAP	MFLDA	SelMFDF
Breast cancer	0.624	0.531	0.403	0.047	0.396	0.031	0.569
Stomach cancer	0.372	0.338	0.364	0.138	0.094	0.008	0.327
Kidney cancer	0.238	0.709	0.663	0.030	0.462	0.034	0.722
Prostate cancer	0.370	0.361	0.333	0.176	0.297	0.092	0.358
Gastrointestinal system cancer	0.879	0.782	0.271	0.130	0.238	0.104	0.804
Liver cancer	0.875	0.830	0.498	0.140	0.511	0.110	0.784
Hematologic cancer	0.461	0.425	0.403	0.216	0.370	0.121	0.435
Lung cancer	0.628	0.526	0.437	0.131	0.363	0.171	0.581
Ovarian cancer	0.205	0.394	0.483	0.027	0.427	0.023	0.372
Organ system cancer	0.837	0.781	0.765	0.411	0.628	0.338	0.757
Average AUC of 405 diseases	0.481	0.283	0.152	0.059	0.127	0.039	0.303

Disease name	VADLP	CNNLDA	AUPR Ping’s method	SIMCLDA	LDAP	MFLDA	SelMFDF
Breast cancer	0.624	0.531	0.403	0.047	0.396	0.031	0.569
Stomach cancer	0.372	0.338	0.364	0.138	0.094	0.008	0.327
Kidney cancer	0.238	0.709	0.663	0.030	0.462	0.034	0.722
Prostate cancer	0.370	0.361	0.333	0.176	0.297	0.092	0.358
Gastrointestinal system cancer	0.879	0.782	0.271	0.130	0.238	0.104	0.804
Liver cancer	0.875	0.830	0.498	0.140	0.511	0.110	0.784
Hematologic cancer	0.461	0.425	0.403	0.216	0.370	0.121	0.435
Lung cancer	0.628	0.526	0.437	0.131	0.363	0.171	0.581
Ovarian cancer	0.205	0.394	0.483	0.027	0.427	0.023	0.372
Organ system cancer	0.837	0.781	0.765	0.411	0.628	0.338	0.757
Average AUC of 405 diseases	0.481	0.283	0.152	0.059	0.127	0.039	0.303

^*10 well-characterized diseases are those which are associated with at least 20 lncRNAs.

The bold values indicate the higher AUPRs.

Table 3

Open in new tab

Average AUPR over all the diseases and AUPRs of 10 well-characterized disease*

Disease name	VADLP	CNNLDA	AUPR Ping’s method	SIMCLDA	LDAP	MFLDA	SelMFDF
Breast cancer	0.624	0.531	0.403	0.047	0.396	0.031	0.569
Stomach cancer	0.372	0.338	0.364	0.138	0.094	0.008	0.327
Kidney cancer	0.238	0.709	0.663	0.030	0.462	0.034	0.722
Prostate cancer	0.370	0.361	0.333	0.176	0.297	0.092	0.358
Gastrointestinal system cancer	0.879	0.782	0.271	0.130	0.238	0.104	0.804
Liver cancer	0.875	0.830	0.498	0.140	0.511	0.110	0.784
Hematologic cancer	0.461	0.425	0.403	0.216	0.370	0.121	0.435
Lung cancer	0.628	0.526	0.437	0.131	0.363	0.171	0.581
Ovarian cancer	0.205	0.394	0.483	0.027	0.427	0.023	0.372
Organ system cancer	0.837	0.781	0.765	0.411	0.628	0.338	0.757
Average AUC of 405 diseases	0.481	0.283	0.152	0.059	0.127	0.039	0.303

Disease name	VADLP	CNNLDA	AUPR Ping’s method	SIMCLDA	LDAP	MFLDA	SelMFDF
Breast cancer	0.624	0.531	0.403	0.047	0.396	0.031	0.569
Stomach cancer	0.372	0.338	0.364	0.138	0.094	0.008	0.327
Kidney cancer	0.238	0.709	0.663	0.030	0.462	0.034	0.722
Prostate cancer	0.370	0.361	0.333	0.176	0.297	0.092	0.358
Gastrointestinal system cancer	0.879	0.782	0.271	0.130	0.238	0.104	0.804
Liver cancer	0.875	0.830	0.498	0.140	0.511	0.110	0.784
Hematologic cancer	0.461	0.425	0.403	0.216	0.370	0.121	0.435
Lung cancer	0.628	0.526	0.437	0.131	0.363	0.171	0.581
Ovarian cancer	0.205	0.394	0.483	0.027	0.427	0.023	0.372
Organ system cancer	0.837	0.781	0.765	0.411	0.628	0.338	0.757
Average AUC of 405 diseases	0.481	0.283	0.152	0.059	0.127	0.039	0.303

^*10 well-characterized diseases are those which are associated with at least 20 lncRNAs.

The bold values indicate the higher AUPRs.