Table 1
Open in new tab

SV detection methods and example SV callers

MethodDetection resolutionDetectable SV typesDetectable SV sizesExample SV callersReferences
Read-pairRoughAllMedian size SVBreakDancerChen et al. [14]
Split-readBase pairAllSmall size SVPindelYe et al. [24]
Read-pair and split-readBase pairAllDepend on filtering/scoringDellyRausch et al. [29]
LumpyLayer et al. [30]
Read-pair, split-read and local-assemblyBase pairAllDepend on filtering/scoringMantaChen et al. [33]
GRIDSSCameron et al. [26]
SvABAWala et al. [27]
MethodDetection resolutionDetectable SV typesDetectable SV sizesExample SV callersReferences
Read-pairRoughAllMedian size SVBreakDancerChen et al. [14]
Split-readBase pairAllSmall size SVPindelYe et al. [24]
Read-pair and split-readBase pairAllDepend on filtering/scoringDellyRausch et al. [29]
LumpyLayer et al. [30]
Read-pair, split-read and local-assemblyBase pairAllDepend on filtering/scoringMantaChen et al. [33]
GRIDSSCameron et al. [26]
SvABAWala et al. [27]
Table 1
Open in new tab

SV detection methods and example SV callers

MethodDetection resolutionDetectable SV typesDetectable SV sizesExample SV callersReferences
Read-pairRoughAllMedian size SVBreakDancerChen et al. [14]
Split-readBase pairAllSmall size SVPindelYe et al. [24]
Read-pair and split-readBase pairAllDepend on filtering/scoringDellyRausch et al. [29]
LumpyLayer et al. [30]
Read-pair, split-read and local-assemblyBase pairAllDepend on filtering/scoringMantaChen et al. [33]
GRIDSSCameron et al. [26]
SvABAWala et al. [27]
MethodDetection resolutionDetectable SV typesDetectable SV sizesExample SV callersReferences
Read-pairRoughAllMedian size SVBreakDancerChen et al. [14]
Split-readBase pairAllSmall size SVPindelYe et al. [24]
Read-pair and split-readBase pairAllDepend on filtering/scoringDellyRausch et al. [29]
LumpyLayer et al. [30]
Read-pair, split-read and local-assemblyBase pairAllDepend on filtering/scoringMantaChen et al. [33]
GRIDSSCameron et al. [26]
SvABAWala et al. [27]
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