Table 3

K-mer counting results for the F. mandshurica dataset

Methodk = 28k = 40k = 55k = 65
RAMDiskTimeRAMDiskTimeRAMDiskTimeRAMDiskTime
Jellyfish219 (500M)0209528 (500M)0204240 (500M)0200794 (500M)02396
Jellyfish2157 (18G)01472134 (10G)08988101 (8G)01443123 (6G)01503
KMC310312611981021081285103981212103931254
KMC35312611315410812205498115153931353
CHTKC1000852100086910008211000862
CHTKC-opt1000843100083610008091000808
Methodk = 28k = 40k = 55k = 65
RAMDiskTimeRAMDiskTimeRAMDiskTimeRAMDiskTime
Jellyfish219 (500M)0209528 (500M)0204240 (500M)0200794 (500M)02396
Jellyfish2157 (18G)01472134 (10G)08988101 (8G)01443123 (6G)01503
KMC310312611981021081285103981212103931254
KMC35312611315410812205498115153931353
CHTKC1000852100086910008211000862
CHTKC-opt1000843100083610008091000808

Note: Timings in seconds and RAM/disk consumption in GB.

Table 3

K-mer counting results for the F. mandshurica dataset

Methodk = 28k = 40k = 55k = 65
RAMDiskTimeRAMDiskTimeRAMDiskTimeRAMDiskTime
Jellyfish219 (500M)0209528 (500M)0204240 (500M)0200794 (500M)02396
Jellyfish2157 (18G)01472134 (10G)08988101 (8G)01443123 (6G)01503
KMC310312611981021081285103981212103931254
KMC35312611315410812205498115153931353
CHTKC1000852100086910008211000862
CHTKC-opt1000843100083610008091000808
Methodk = 28k = 40k = 55k = 65
RAMDiskTimeRAMDiskTimeRAMDiskTimeRAMDiskTime
Jellyfish219 (500M)0209528 (500M)0204240 (500M)0200794 (500M)02396
Jellyfish2157 (18G)01472134 (10G)08988101 (8G)01443123 (6G)01503
KMC310312611981021081285103981212103931254
KMC35312611315410812205498115153931353
CHTKC1000852100086910008211000862
CHTKC-opt1000843100083610008091000808

Note: Timings in seconds and RAM/disk consumption in GB.

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