Table 2

K-mer counting results for the M. balbisiana dataset

Methodk = 28k = 40k = 55k = 65
RAMDiskTimeRAMDiskTimeRAMDiskTimeRAMDiskTime
Jellyfish219 (500M)084728 (500M)0108740 (500M)0101149 (500M)01343
Jellyfish282 (9G)0138570 (5G)0385953 (4G)0114763 (3G)01028
KMC35445387543643354294205426418
KMC34145468413642641293794126395
CHTKC510329510309510271510256
CHTKC-opt510314510306510267510240
Methodk = 28k = 40k = 55k = 65
RAMDiskTimeRAMDiskTimeRAMDiskTimeRAMDiskTime
Jellyfish219 (500M)084728 (500M)0108740 (500M)0101149 (500M)01343
Jellyfish282 (9G)0138570 (5G)0385953 (4G)0114763 (3G)01028
KMC35445387543643354294205426418
KMC34145468413642641293794126395
CHTKC510329510309510271510256
CHTKC-opt510314510306510267510240

Note: Timings in seconds and RAM/disk consumption in GB.

Table 2

K-mer counting results for the M. balbisiana dataset

Methodk = 28k = 40k = 55k = 65
RAMDiskTimeRAMDiskTimeRAMDiskTimeRAMDiskTime
Jellyfish219 (500M)084728 (500M)0108740 (500M)0101149 (500M)01343
Jellyfish282 (9G)0138570 (5G)0385953 (4G)0114763 (3G)01028
KMC35445387543643354294205426418
KMC34145468413642641293794126395
CHTKC510329510309510271510256
CHTKC-opt510314510306510267510240
Methodk = 28k = 40k = 55k = 65
RAMDiskTimeRAMDiskTimeRAMDiskTimeRAMDiskTime
Jellyfish219 (500M)084728 (500M)0108740 (500M)0101149 (500M)01343
Jellyfish282 (9G)0138570 (5G)0385953 (4G)0114763 (3G)01028
KMC35445387543643354294205426418
KMC34145468413642641293794126395
CHTKC510329510309510271510256
CHTKC-opt510314510306510267510240

Note: Timings in seconds and RAM/disk consumption in GB.

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