|$F_1$|-scores over the singleton-enriched data set generated from the M. genitalium genome. Experiments are reported by extraction modality (roots and leaves) and by variation percentage (0.1% and 0.05%). Best values are highlighted in gray
. | Roots - 0.1% . | Roots - 0.05% . | Leaves - 0.1% . | Leaves - 0.05% . |
---|---|---|---|---|
GET_H. | 0.942 | 0.934 | 0.978 | 0.954 |
Panseq | 0.795 | 0.823 | N | N |
PanDelos | 0.999 | 0.999 | 0.988 | 0.986 |
PanX | 0.991 | 0.985 | 0.976 | 0.959 |
PGAP | 0.809 | 0.806 | 0.867 | 0.819 |
PanOCT | 0.942 | 0.986 | 0.060 | 0.069 |
micropan | 0.003 | 0.006 | 0.002 | 0.003 |
PanGeT | 0.996 | 0.996 | 0.979 | 0.968 |
Roary | 0.962 | 0.981 | 0.421 | 0.408 |
. | Roots - 0.1% . | Roots - 0.05% . | Leaves - 0.1% . | Leaves - 0.05% . |
---|---|---|---|---|
GET_H. | 0.942 | 0.934 | 0.978 | 0.954 |
Panseq | 0.795 | 0.823 | N | N |
PanDelos | 0.999 | 0.999 | 0.988 | 0.986 |
PanX | 0.991 | 0.985 | 0.976 | 0.959 |
PGAP | 0.809 | 0.806 | 0.867 | 0.819 |
PanOCT | 0.942 | 0.986 | 0.060 | 0.069 |
micropan | 0.003 | 0.006 | 0.002 | 0.003 |
PanGeT | 0.996 | 0.996 | 0.979 | 0.968 |
Roary | 0.962 | 0.981 | 0.421 | 0.408 |
|$F_1$|-scores over the singleton-enriched data set generated from the M. genitalium genome. Experiments are reported by extraction modality (roots and leaves) and by variation percentage (0.1% and 0.05%). Best values are highlighted in gray
. | Roots - 0.1% . | Roots - 0.05% . | Leaves - 0.1% . | Leaves - 0.05% . |
---|---|---|---|---|
GET_H. | 0.942 | 0.934 | 0.978 | 0.954 |
Panseq | 0.795 | 0.823 | N | N |
PanDelos | 0.999 | 0.999 | 0.988 | 0.986 |
PanX | 0.991 | 0.985 | 0.976 | 0.959 |
PGAP | 0.809 | 0.806 | 0.867 | 0.819 |
PanOCT | 0.942 | 0.986 | 0.060 | 0.069 |
micropan | 0.003 | 0.006 | 0.002 | 0.003 |
PanGeT | 0.996 | 0.996 | 0.979 | 0.968 |
Roary | 0.962 | 0.981 | 0.421 | 0.408 |
. | Roots - 0.1% . | Roots - 0.05% . | Leaves - 0.1% . | Leaves - 0.05% . |
---|---|---|---|---|
GET_H. | 0.942 | 0.934 | 0.978 | 0.954 |
Panseq | 0.795 | 0.823 | N | N |
PanDelos | 0.999 | 0.999 | 0.988 | 0.986 |
PanX | 0.991 | 0.985 | 0.976 | 0.959 |
PGAP | 0.809 | 0.806 | 0.867 | 0.819 |
PanOCT | 0.942 | 0.986 | 0.060 | 0.069 |
micropan | 0.003 | 0.006 | 0.002 | 0.003 |
PanGeT | 0.996 | 0.996 | 0.979 | 0.968 |
Roary | 0.962 | 0.981 | 0.421 | 0.408 |
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