Table 4

Pangenomic profiles regarding the random benchmarks of the singleton-less data set with 10 genomes. Pangenomic profiles regarding the singleton-less dataset generated with default values of variation (0.3% indel rate, 0.3% loss rate and 0% duplication rate) from which 10 genomes were extracted randomly from the 100 individuals phylogenetic tree. For each possible number of genomes (1 to 10) that may be involved by a gene family, the table reports the amount of gene families involving the specific number of genomes. The real value refers to the actual number of families in the synthetic dataset

GenomesReal valueGET_HOM.micropanPanDelosPanGeTPanOCTPanseqPanXPGAPRoary
10602011321496192066677
21989663333202311663510
3021510105021
4001110113020
50021100140
601023122030
728143164363404290
8117964832761566001106220
91330013000900
1064554661100050700
Total fam.69081513551020669669209976615036688
GenomesReal valueGET_HOM.micropanPanDelosPanGeTPanOCTPanseqPanXPGAPRoary
10602011321496192066677
21989663333202311663510
3021510105021
4001110113020
50021100140
601023122030
728143164363404290
8117964832761566001106220
91330013000900
1064554661100050700
Total fam.69081513551020669669209976615036688
Table 4

Pangenomic profiles regarding the random benchmarks of the singleton-less data set with 10 genomes. Pangenomic profiles regarding the singleton-less dataset generated with default values of variation (0.3% indel rate, 0.3% loss rate and 0% duplication rate) from which 10 genomes were extracted randomly from the 100 individuals phylogenetic tree. For each possible number of genomes (1 to 10) that may be involved by a gene family, the table reports the amount of gene families involving the specific number of genomes. The real value refers to the actual number of families in the synthetic dataset

GenomesReal valueGET_HOM.micropanPanDelosPanGeTPanOCTPanseqPanXPGAPRoary
10602011321496192066677
21989663333202311663510
3021510105021
4001110113020
50021100140
601023122030
728143164363404290
8117964832761566001106220
91330013000900
1064554661100050700
Total fam.69081513551020669669209976615036688
GenomesReal valueGET_HOM.micropanPanDelosPanGeTPanOCTPanseqPanXPGAPRoary
10602011321496192066677
21989663333202311663510
3021510105021
4001110113020
50021100140
601023122030
728143164363404290
8117964832761566001106220
91330013000900
1064554661100050700
Total fam.69081513551020669669209976615036688
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