Comparison of null results of three search methods and their corresponding PL-search methods on the two benchmark datasets
| Method . | Number of NULL result . | |
|---|---|---|
| SCOP 1.59 benchmark dataset . | SCOPe 2.06 benchmark dataset . | |
| HHblits | 7 | 135 |
| PL-HHblitsa | 2 | 25 |
| PSI-BLAST | 15 | 28 |
| PL-BLASTb | 15 | 28 |
| JackHMMER | 1207 | 1365 |
| PL-HMMERc | 1141 | 1261 |
| Method . | Number of NULL result . | |
|---|---|---|
| SCOP 1.59 benchmark dataset . | SCOPe 2.06 benchmark dataset . | |
| HHblits | 7 | 135 |
| PL-HHblitsa | 2 | 25 |
| PSI-BLAST | 15 | 28 |
| PL-BLASTb | 15 | 28 |
| JackHMMER | 1207 | 1365 |
| PL-HMMERc | 1141 | 1261 |
aPL-based search based on HHblits with the default parameters.
bPL-based search based on PSI-BLAST with default parameters except that the iterations was set as five.
cPL-based search based on JackHMMER with the default parameters.
Comparison of null results of three search methods and their corresponding PL-search methods on the two benchmark datasets
| Method . | Number of NULL result . | |
|---|---|---|
| SCOP 1.59 benchmark dataset . | SCOPe 2.06 benchmark dataset . | |
| HHblits | 7 | 135 |
| PL-HHblitsa | 2 | 25 |
| PSI-BLAST | 15 | 28 |
| PL-BLASTb | 15 | 28 |
| JackHMMER | 1207 | 1365 |
| PL-HMMERc | 1141 | 1261 |
| Method . | Number of NULL result . | |
|---|---|---|
| SCOP 1.59 benchmark dataset . | SCOPe 2.06 benchmark dataset . | |
| HHblits | 7 | 135 |
| PL-HHblitsa | 2 | 25 |
| PSI-BLAST | 15 | 28 |
| PL-BLASTb | 15 | 28 |
| JackHMMER | 1207 | 1365 |
| PL-HMMERc | 1141 | 1261 |
aPL-based search based on HHblits with the default parameters.
bPL-based search based on PSI-BLAST with default parameters except that the iterations was set as five.
cPL-based search based on JackHMMER with the default parameters.
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