Average and standard deviation of precision, Recall and F1-score obtained by each tool in the Strand-Blind full transcript sets analyzed. Bold font highlight the higher value for each group.No results are available for ESTScan in fungal transcripts due to the absence of a fungal model
| Group . | Predictor . | Precision . | Recall . | F1-score . |
|---|---|---|---|---|
| Vertebrates | CodAn | 0.99 |$\pm $| 0.00 | 0.98 |$\pm $| 0.01 | 0.99 |$\pm $| 0.01 |
| ESTscan | 0.36 |$\pm $| 0.02 | 0.36 |$\pm $| 0.02 | 0.88 |$\pm $| 0.13 | |
| TransDecoder | 0.18 |$\pm $| 0.04 | 0.18 |$\pm $| 0.04 | 0.93 |$\pm $| 0.05 | |
| Prodigal | 0.27 |$\pm $| 0.05 | 0.27 |$\pm $| 0.05 | 0.93 |$\pm $| 0.02 | |
| GeneMarkS-T | 0.50 |$\pm $| 0.00 | 0.49 |$\pm $| 0.00 | 0.49 |$\pm $| 0.00 | |
| Invertebrates | CodAn | 0.99 |$\pm $| 0.02 | 0.95 |$\pm $| 0.03 | 0.97 |$\pm $| 0.02 |
| ESTscan | 0.31 |$\pm $| 0.10 | 0.21 |$\pm $| 0.13 | 0.24 |$\pm $| 0.12 | |
| TransDecoder | 0.29 |$\pm $| 0.08 | 0.28 |$\pm $| 0.07 | 0.29 |$\pm $| 0.08 | |
| Prodigal | 0.39 |$\pm $| 0.05 | 0.39 |$\pm $| 0.05 | 0.39 |$\pm $| 0.05 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.48 |$\pm $| 0.01 | 0.48 |$\pm $| 0.01 | |
| Plants | CodAn | 0.99 |$\pm $| 0.01 | 0.96 |$\pm $| 0.04 | 0.98 |$\pm $| 0.02 |
| ESTscan | 0.35 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | |
| TransDecoder | 0.22 |$\pm $| 0.13 | 0.21 |$\pm $| 0.12 | 0.21 |$\pm $| 0.12 | |
| Prodigal | 0.35 |$\pm $| 0.05 | 0.35 |$\pm $| 0.05 | 0.35 |$\pm $| 0.05 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.48 |$\pm $| 0.02 | 0.49 |$\pm $| 0.01 | |
| Fungi | CodAn | 0.98 |$\pm $| 0.01 | 0.94 |$\pm $| 0.04 | 0.96 |$\pm $| 0.02 |
| ESTscan | NA | NA | NA | |
| TransDecoder | 0.21 |$\pm $| 0.11 | 0.20 |$\pm $| 0.10 | 0.21 |$\pm $| 0.11 | |
| Prodigal | 0.36 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | 0.36 |$\pm $| 0.06 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.47 |$\pm $| 0.02 | 0.48 |$\pm $| 0.01 |
| Group . | Predictor . | Precision . | Recall . | F1-score . |
|---|---|---|---|---|
| Vertebrates | CodAn | 0.99 |$\pm $| 0.00 | 0.98 |$\pm $| 0.01 | 0.99 |$\pm $| 0.01 |
| ESTscan | 0.36 |$\pm $| 0.02 | 0.36 |$\pm $| 0.02 | 0.88 |$\pm $| 0.13 | |
| TransDecoder | 0.18 |$\pm $| 0.04 | 0.18 |$\pm $| 0.04 | 0.93 |$\pm $| 0.05 | |
| Prodigal | 0.27 |$\pm $| 0.05 | 0.27 |$\pm $| 0.05 | 0.93 |$\pm $| 0.02 | |
| GeneMarkS-T | 0.50 |$\pm $| 0.00 | 0.49 |$\pm $| 0.00 | 0.49 |$\pm $| 0.00 | |
| Invertebrates | CodAn | 0.99 |$\pm $| 0.02 | 0.95 |$\pm $| 0.03 | 0.97 |$\pm $| 0.02 |
| ESTscan | 0.31 |$\pm $| 0.10 | 0.21 |$\pm $| 0.13 | 0.24 |$\pm $| 0.12 | |
| TransDecoder | 0.29 |$\pm $| 0.08 | 0.28 |$\pm $| 0.07 | 0.29 |$\pm $| 0.08 | |
| Prodigal | 0.39 |$\pm $| 0.05 | 0.39 |$\pm $| 0.05 | 0.39 |$\pm $| 0.05 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.48 |$\pm $| 0.01 | 0.48 |$\pm $| 0.01 | |
| Plants | CodAn | 0.99 |$\pm $| 0.01 | 0.96 |$\pm $| 0.04 | 0.98 |$\pm $| 0.02 |
| ESTscan | 0.35 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | |
| TransDecoder | 0.22 |$\pm $| 0.13 | 0.21 |$\pm $| 0.12 | 0.21 |$\pm $| 0.12 | |
| Prodigal | 0.35 |$\pm $| 0.05 | 0.35 |$\pm $| 0.05 | 0.35 |$\pm $| 0.05 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.48 |$\pm $| 0.02 | 0.49 |$\pm $| 0.01 | |
| Fungi | CodAn | 0.98 |$\pm $| 0.01 | 0.94 |$\pm $| 0.04 | 0.96 |$\pm $| 0.02 |
| ESTscan | NA | NA | NA | |
| TransDecoder | 0.21 |$\pm $| 0.11 | 0.20 |$\pm $| 0.10 | 0.21 |$\pm $| 0.11 | |
| Prodigal | 0.36 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | 0.36 |$\pm $| 0.06 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.47 |$\pm $| 0.02 | 0.48 |$\pm $| 0.01 |
Average and standard deviation of precision, Recall and F1-score obtained by each tool in the Strand-Blind full transcript sets analyzed. Bold font highlight the higher value for each group.No results are available for ESTScan in fungal transcripts due to the absence of a fungal model
| Group . | Predictor . | Precision . | Recall . | F1-score . |
|---|---|---|---|---|
| Vertebrates | CodAn | 0.99 |$\pm $| 0.00 | 0.98 |$\pm $| 0.01 | 0.99 |$\pm $| 0.01 |
| ESTscan | 0.36 |$\pm $| 0.02 | 0.36 |$\pm $| 0.02 | 0.88 |$\pm $| 0.13 | |
| TransDecoder | 0.18 |$\pm $| 0.04 | 0.18 |$\pm $| 0.04 | 0.93 |$\pm $| 0.05 | |
| Prodigal | 0.27 |$\pm $| 0.05 | 0.27 |$\pm $| 0.05 | 0.93 |$\pm $| 0.02 | |
| GeneMarkS-T | 0.50 |$\pm $| 0.00 | 0.49 |$\pm $| 0.00 | 0.49 |$\pm $| 0.00 | |
| Invertebrates | CodAn | 0.99 |$\pm $| 0.02 | 0.95 |$\pm $| 0.03 | 0.97 |$\pm $| 0.02 |
| ESTscan | 0.31 |$\pm $| 0.10 | 0.21 |$\pm $| 0.13 | 0.24 |$\pm $| 0.12 | |
| TransDecoder | 0.29 |$\pm $| 0.08 | 0.28 |$\pm $| 0.07 | 0.29 |$\pm $| 0.08 | |
| Prodigal | 0.39 |$\pm $| 0.05 | 0.39 |$\pm $| 0.05 | 0.39 |$\pm $| 0.05 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.48 |$\pm $| 0.01 | 0.48 |$\pm $| 0.01 | |
| Plants | CodAn | 0.99 |$\pm $| 0.01 | 0.96 |$\pm $| 0.04 | 0.98 |$\pm $| 0.02 |
| ESTscan | 0.35 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | |
| TransDecoder | 0.22 |$\pm $| 0.13 | 0.21 |$\pm $| 0.12 | 0.21 |$\pm $| 0.12 | |
| Prodigal | 0.35 |$\pm $| 0.05 | 0.35 |$\pm $| 0.05 | 0.35 |$\pm $| 0.05 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.48 |$\pm $| 0.02 | 0.49 |$\pm $| 0.01 | |
| Fungi | CodAn | 0.98 |$\pm $| 0.01 | 0.94 |$\pm $| 0.04 | 0.96 |$\pm $| 0.02 |
| ESTscan | NA | NA | NA | |
| TransDecoder | 0.21 |$\pm $| 0.11 | 0.20 |$\pm $| 0.10 | 0.21 |$\pm $| 0.11 | |
| Prodigal | 0.36 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | 0.36 |$\pm $| 0.06 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.47 |$\pm $| 0.02 | 0.48 |$\pm $| 0.01 |
| Group . | Predictor . | Precision . | Recall . | F1-score . |
|---|---|---|---|---|
| Vertebrates | CodAn | 0.99 |$\pm $| 0.00 | 0.98 |$\pm $| 0.01 | 0.99 |$\pm $| 0.01 |
| ESTscan | 0.36 |$\pm $| 0.02 | 0.36 |$\pm $| 0.02 | 0.88 |$\pm $| 0.13 | |
| TransDecoder | 0.18 |$\pm $| 0.04 | 0.18 |$\pm $| 0.04 | 0.93 |$\pm $| 0.05 | |
| Prodigal | 0.27 |$\pm $| 0.05 | 0.27 |$\pm $| 0.05 | 0.93 |$\pm $| 0.02 | |
| GeneMarkS-T | 0.50 |$\pm $| 0.00 | 0.49 |$\pm $| 0.00 | 0.49 |$\pm $| 0.00 | |
| Invertebrates | CodAn | 0.99 |$\pm $| 0.02 | 0.95 |$\pm $| 0.03 | 0.97 |$\pm $| 0.02 |
| ESTscan | 0.31 |$\pm $| 0.10 | 0.21 |$\pm $| 0.13 | 0.24 |$\pm $| 0.12 | |
| TransDecoder | 0.29 |$\pm $| 0.08 | 0.28 |$\pm $| 0.07 | 0.29 |$\pm $| 0.08 | |
| Prodigal | 0.39 |$\pm $| 0.05 | 0.39 |$\pm $| 0.05 | 0.39 |$\pm $| 0.05 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.48 |$\pm $| 0.01 | 0.48 |$\pm $| 0.01 | |
| Plants | CodAn | 0.99 |$\pm $| 0.01 | 0.96 |$\pm $| 0.04 | 0.98 |$\pm $| 0.02 |
| ESTscan | 0.35 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | |
| TransDecoder | 0.22 |$\pm $| 0.13 | 0.21 |$\pm $| 0.12 | 0.21 |$\pm $| 0.12 | |
| Prodigal | 0.35 |$\pm $| 0.05 | 0.35 |$\pm $| 0.05 | 0.35 |$\pm $| 0.05 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.48 |$\pm $| 0.02 | 0.49 |$\pm $| 0.01 | |
| Fungi | CodAn | 0.98 |$\pm $| 0.01 | 0.94 |$\pm $| 0.04 | 0.96 |$\pm $| 0.02 |
| ESTscan | NA | NA | NA | |
| TransDecoder | 0.21 |$\pm $| 0.11 | 0.20 |$\pm $| 0.10 | 0.21 |$\pm $| 0.11 | |
| Prodigal | 0.36 |$\pm $| 0.06 | 0.35 |$\pm $| 0.06 | 0.36 |$\pm $| 0.06 | |
| GeneMarkS-T | 0.49 |$\pm $| 0.01 | 0.47 |$\pm $| 0.02 | 0.48 |$\pm $| 0.01 |
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