Table I. Open in new tab Log 2 FC and...

Gene Identifier	Name	Description	3 h	24 h
ATCG01090	ndhI	Subunit of the chloroplast NAD(P)H dehydrogenase complex	−0.54	0.47	−3.57	2.42E-04
ATCG00360	ycf3	Protein required for PSI assembly and stability	0.10	0.72	−3.38	3.42E-05
ATCG00020	psbA	PSII reaction center protein A	−0.14	0.93	−3.37	2.28E-09
ATCG00730	petD	Subunit IV of the cytochrome b ₆/f complex	−0.18	0.94	−3.27	3.06E-07
ATCG00340	psaB	D1 subunit of PSI and PSII reaction centers	−0.09	0.81	−3.14	1.85E-08
ATCG00280	psbC	CP43 subunit of the PSII reaction center	−0.16	0.96	−3.12	2.67E-08
ATCG00520	ycf4	Protein required for PSI assembly and stability	−0.23	1.00	−3.07	8.37E-06
ATCG00720	petB	Cytochrome b ₆ subunit of the cytochrome b ₆ f complex	−0.23	0.89	−3.03	1.38E-07
ATCG01100	ndhA	NADH dehydrogenase ND1	−0.09	0.89	−3.02	4.18E-05
ATCG00490	rbcL	Large subunit of Rubisco	−0.18	0.95	−2.99	5.49E-08
ATCG00350	psaA	Protein comprising the reaction center for PSI along with the psaB protein	−0.13	0.92	−2.93	1.09E-07
ATCG00540	petA	Cytochrome f apoprotein	−0.31	0.65	−2.89	9.87E-07
ATCG00650	rps18	Chloroplast ribosomal protein S18	−0.50	0.38	−2.76	1.89E-04
ATCG01040	ycf5	Hypothetical protein	−0.49	0.31	−2.76	3.72E-04
ATCG00140	atpH	ATPase III subunit	0.10	0.77	−2.68	2.23E-04
ATCG00040	matK	Maturase located in the trnK intron in the chloroplast genome	−0.32	0.68	−2.55	8.28E-08
ATCG00160	rps2	Chloroplast ribosomal protein S2	−0.39	0.65	−2.55	2.03E-04
ATCG00270	psbD	PSII reaction center protein D	−0.05	0.74	−2.54	4.03E-06
ATCG00680	psbB	PSII reaction center protein B	−0.11	0.87	−2.52	5.41E-07
ATCG00330	rps14	Chloroplast ribosomal protein S14	0.20	0.55	−2.48	5.54E-05
ATCG00420	ndhJ	NADH dehydrogenase subunit J	−0.31	0.63	−2.46	6.86E-05
ATCG00500	accD	Carboxyltransferase β-subunit of the acetyl-CoA carboxylase complex	−0.70	0.18	−2.32	3.90E-04
ATCG01050	ndhD	Subunit of a NAD(P)H dehydrogenase complex	−0.11	0.90	−2.26	8.12E-05
ATCG00380	rps4	Chloroplast ribosomal protein S4	−0.07	1.00	−2.19	2.25E-04
ATCG00120	atpA	ATP synthase subunit α	−0.20	0.92	−2.13	5.70E-06
ATCG01110	ndhH	49-kD plastid NAD(P)H dehydrogenase subunit H protein	−0.52	0.28	−2.08	3.45E-04
ATCG00170	rpoC2	DNA-directed RNA polymerase β′-subunit 2	−0.16	0.98	−1.87	8.94E-05
ATCG01130	ycf1.2	Hypothetical protein	−0.35	0.60	−1.81	2.03E-05
ATCG00150	atpI	Subunit of ATPase complex CF0	−0.36	0.59	−1.78	3.43E-04

Gene Identifier

Name

Description

3 h

24 h

Log₂FC

ATCG01090

ndhI

Subunit of the chloroplast NAD(P)H dehydrogenase complex

−0.54

0.47

−3.57

2.42E-04

ATCG00360

ycf3

Protein required for PSI assembly and stability

0.10

0.72

−3.38

3.42E-05

ATCG00020

psbA

PSII reaction center protein A

−0.14

0.93

−3.37

2.28E-09

ATCG00730

petD

Subunit IV of the cytochrome b ₆/f complex

−0.18

0.94

−3.27

3.06E-07

ATCG00340

psaB

D1 subunit of PSI and PSII reaction centers

−0.09

0.81

−3.14

1.85E-08

ATCG00280

psbC

CP43 subunit of the PSII reaction center

−0.16

0.96

−3.12

2.67E-08

ATCG00520

ycf4

Protein required for PSI assembly and stability

−0.23

1.00

−3.07

8.37E-06

ATCG00720

petB

Cytochrome b ₆ subunit of the cytochrome b ₆ f complex

−0.23

0.89

−3.03

1.38E-07

ATCG01100

ndhA

NADH dehydrogenase ND1

−0.09

0.89

−3.02

4.18E-05

ATCG00490

rbcL

Large subunit of Rubisco

−0.18

0.95

−2.99

5.49E-08

ATCG00350

psaA

Protein comprising the reaction center for PSI along with the psaB protein

−0.13

0.92

−2.93

1.09E-07

ATCG00540

petA

Cytochrome f apoprotein

−0.31

0.65

−2.89

9.87E-07

ATCG00650

rps18

Chloroplast ribosomal protein S18

−0.50

0.38

−2.76

1.89E-04

ATCG01040

ycf5

Hypothetical protein

−0.49

0.31

−2.76

3.72E-04

ATCG00140

atpH

ATPase III subunit

0.10

0.77

−2.68

2.23E-04

ATCG00040

matK

Maturase located in the trnK intron in the chloroplast genome

−0.32

0.68

−2.55

8.28E-08

ATCG00160

rps2

Chloroplast ribosomal protein S2

−0.39

0.65

−2.55

2.03E-04

ATCG00270

psbD

PSII reaction center protein D

−0.05

0.74

−2.54

4.03E-06

ATCG00680

psbB

PSII reaction center protein B

−0.11

0.87

−2.52

5.41E-07

ATCG00330

rps14

Chloroplast ribosomal protein S14

0.20

0.55

−2.48

5.54E-05

ATCG00420

ndhJ

NADH dehydrogenase subunit J

−0.31

0.63

−2.46

6.86E-05

ATCG00500

accD

Carboxyltransferase β-subunit of the acetyl-CoA carboxylase complex

−0.70

0.18

−2.32

3.90E-04

ATCG01050

ndhD

Subunit of a NAD(P)H dehydrogenase complex

−0.11

0.90

−2.26

8.12E-05

ATCG00380

rps4

Chloroplast ribosomal protein S4

−0.07

1.00

−2.19

2.25E-04

ATCG00120

atpA

ATP synthase subunit α

−0.20

0.92

−2.13

5.70E-06

ATCG01110

ndhH

49-kD plastid NAD(P)H dehydrogenase subunit H protein

−0.52

0.28

−2.08

3.45E-04

ATCG00170

rpoC2

DNA-directed RNA polymerase β′-subunit 2

−0.16

0.98

−1.87

8.94E-05

ATCG01130

ycf1.2

Hypothetical protein

−0.35

0.60

−1.81

2.03E-05

ATCG00150

atpI

Subunit of ATPase complex CF0

−0.36

0.59

−1.78

3.43E-04

Gene Identifier	Name	Description	3 h	24 h
ATCG01090	ndhI	Subunit of the chloroplast NAD(P)H dehydrogenase complex	−0.54	0.47	−3.57	2.42E-04
ATCG00360	ycf3	Protein required for PSI assembly and stability	0.10	0.72	−3.38	3.42E-05
ATCG00020	psbA	PSII reaction center protein A	−0.14	0.93	−3.37	2.28E-09
ATCG00730	petD	Subunit IV of the cytochrome b ₆/f complex	−0.18	0.94	−3.27	3.06E-07
ATCG00340	psaB	D1 subunit of PSI and PSII reaction centers	−0.09	0.81	−3.14	1.85E-08
ATCG00280	psbC	CP43 subunit of the PSII reaction center	−0.16	0.96	−3.12	2.67E-08
ATCG00520	ycf4	Protein required for PSI assembly and stability	−0.23	1.00	−3.07	8.37E-06
ATCG00720	petB	Cytochrome b ₆ subunit of the cytochrome b ₆ f complex	−0.23	0.89	−3.03	1.38E-07
ATCG01100	ndhA	NADH dehydrogenase ND1	−0.09	0.89	−3.02	4.18E-05
ATCG00490	rbcL	Large subunit of Rubisco	−0.18	0.95	−2.99	5.49E-08
ATCG00350	psaA	Protein comprising the reaction center for PSI along with the psaB protein	−0.13	0.92	−2.93	1.09E-07
ATCG00540	petA	Cytochrome f apoprotein	−0.31	0.65	−2.89	9.87E-07
ATCG00650	rps18	Chloroplast ribosomal protein S18	−0.50	0.38	−2.76	1.89E-04
ATCG01040	ycf5	Hypothetical protein	−0.49	0.31	−2.76	3.72E-04
ATCG00140	atpH	ATPase III subunit	0.10	0.77	−2.68	2.23E-04
ATCG00040	matK	Maturase located in the trnK intron in the chloroplast genome	−0.32	0.68	−2.55	8.28E-08
ATCG00160	rps2	Chloroplast ribosomal protein S2	−0.39	0.65	−2.55	2.03E-04
ATCG00270	psbD	PSII reaction center protein D	−0.05	0.74	−2.54	4.03E-06
ATCG00680	psbB	PSII reaction center protein B	−0.11	0.87	−2.52	5.41E-07
ATCG00330	rps14	Chloroplast ribosomal protein S14	0.20	0.55	−2.48	5.54E-05
ATCG00420	ndhJ	NADH dehydrogenase subunit J	−0.31	0.63	−2.46	6.86E-05
ATCG00500	accD	Carboxyltransferase β-subunit of the acetyl-CoA carboxylase complex	−0.70	0.18	−2.32	3.90E-04
ATCG01050	ndhD	Subunit of a NAD(P)H dehydrogenase complex	−0.11	0.90	−2.26	8.12E-05
ATCG00380	rps4	Chloroplast ribosomal protein S4	−0.07	1.00	−2.19	2.25E-04
ATCG00120	atpA	ATP synthase subunit α	−0.20	0.92	−2.13	5.70E-06
ATCG01110	ndhH	49-kD plastid NAD(P)H dehydrogenase subunit H protein	−0.52	0.28	−2.08	3.45E-04
ATCG00170	rpoC2	DNA-directed RNA polymerase β′-subunit 2	−0.16	0.98	−1.87	8.94E-05
ATCG01130	ycf1.2	Hypothetical protein	−0.35	0.60	−1.81	2.03E-05
ATCG00150	atpI	Subunit of ATPase complex CF0	−0.36	0.59	−1.78	3.43E-04

Table I.

Open in new tab

Log₂FC and corresponding P values for the 29 Suc-repressed chloroplast-encoded transcripts 3 and 24 h after transfer to Suc

Gene Identifier	Name	Description	3 h		24 h
			Log₂FC	P	Log₂FC	P
ATCG01090	ndhI	Subunit of the chloroplast NAD(P)H dehydrogenase complex	−0.54	0.47	−3.57	2.42E-04
ATCG00360	ycf3	Protein required for PSI assembly and stability	0.10	0.72	−3.38	3.42E-05
ATCG00020	psbA	PSII reaction center protein A	−0.14	0.93	−3.37	2.28E-09
ATCG00730	petD	Subunit IV of the cytochrome b ₆/f complex	−0.18	0.94	−3.27	3.06E-07
ATCG00340	psaB	D1 subunit of PSI and PSII reaction centers	−0.09	0.81	−3.14	1.85E-08
ATCG00280	psbC	CP43 subunit of the PSII reaction center	−0.16	0.96	−3.12	2.67E-08
ATCG00520	ycf4	Protein required for PSI assembly and stability	−0.23	1.00	−3.07	8.37E-06
ATCG00720	petB	Cytochrome b ₆ subunit of the cytochrome b ₆ f complex	−0.23	0.89	−3.03	1.38E-07
ATCG01100	ndhA	NADH dehydrogenase ND1	−0.09	0.89	−3.02	4.18E-05
ATCG00490	rbcL	Large subunit of Rubisco	−0.18	0.95	−2.99	5.49E-08
ATCG00350	psaA	Protein comprising the reaction center for PSI along with the psaB protein	−0.13	0.92	−2.93	1.09E-07
ATCG00540	petA	Cytochrome f apoprotein	−0.31	0.65	−2.89	9.87E-07
ATCG00650	rps18	Chloroplast ribosomal protein S18	−0.50	0.38	−2.76	1.89E-04
ATCG01040	ycf5	Hypothetical protein	−0.49	0.31	−2.76	3.72E-04
ATCG00140	atpH	ATPase III subunit	0.10	0.77	−2.68	2.23E-04
ATCG00040	matK	Maturase located in the trnK intron in the chloroplast genome	−0.32	0.68	−2.55	8.28E-08
ATCG00160	rps2	Chloroplast ribosomal protein S2	−0.39	0.65	−2.55	2.03E-04
ATCG00270	psbD	PSII reaction center protein D	−0.05	0.74	−2.54	4.03E-06
ATCG00680	psbB	PSII reaction center protein B	−0.11	0.87	−2.52	5.41E-07
ATCG00330	rps14	Chloroplast ribosomal protein S14	0.20	0.55	−2.48	5.54E-05
ATCG00420	ndhJ	NADH dehydrogenase subunit J	−0.31	0.63	−2.46	6.86E-05
ATCG00500	accD	Carboxyltransferase β-subunit of the acetyl-CoA carboxylase complex	−0.70	0.18	−2.32	3.90E-04
ATCG01050	ndhD	Subunit of a NAD(P)H dehydrogenase complex	−0.11	0.90	−2.26	8.12E-05
ATCG00380	rps4	Chloroplast ribosomal protein S4	−0.07	1.00	−2.19	2.25E-04
ATCG00120	atpA	ATP synthase subunit α	−0.20	0.92	−2.13	5.70E-06
ATCG01110	ndhH	49-kD plastid NAD(P)H dehydrogenase subunit H protein	−0.52	0.28	−2.08	3.45E-04
ATCG00170	rpoC2	DNA-directed RNA polymerase β′-subunit 2	−0.16	0.98	−1.87	8.94E-05
ATCG01130	ycf1.2	Hypothetical protein	−0.35	0.60	−1.81	2.03E-05
ATCG00150	atpI	Subunit of ATPase complex CF0	−0.36	0.59	−1.78	3.43E-04

Gene Identifier	Name	Description	3 h		24 h
			Log₂FC	P	Log₂FC	P
ATCG01090	ndhI	Subunit of the chloroplast NAD(P)H dehydrogenase complex	−0.54	0.47	−3.57	2.42E-04
ATCG00360	ycf3	Protein required for PSI assembly and stability	0.10	0.72	−3.38	3.42E-05
ATCG00020	psbA	PSII reaction center protein A	−0.14	0.93	−3.37	2.28E-09
ATCG00730	petD	Subunit IV of the cytochrome b ₆/f complex	−0.18	0.94	−3.27	3.06E-07
ATCG00340	psaB	D1 subunit of PSI and PSII reaction centers	−0.09	0.81	−3.14	1.85E-08
ATCG00280	psbC	CP43 subunit of the PSII reaction center	−0.16	0.96	−3.12	2.67E-08
ATCG00520	ycf4	Protein required for PSI assembly and stability	−0.23	1.00	−3.07	8.37E-06
ATCG00720	petB	Cytochrome b ₆ subunit of the cytochrome b ₆ f complex	−0.23	0.89	−3.03	1.38E-07
ATCG01100	ndhA	NADH dehydrogenase ND1	−0.09	0.89	−3.02	4.18E-05
ATCG00490	rbcL	Large subunit of Rubisco	−0.18	0.95	−2.99	5.49E-08
ATCG00350	psaA	Protein comprising the reaction center for PSI along with the psaB protein	−0.13	0.92	−2.93	1.09E-07
ATCG00540	petA	Cytochrome f apoprotein	−0.31	0.65	−2.89	9.87E-07
ATCG00650	rps18	Chloroplast ribosomal protein S18	−0.50	0.38	−2.76	1.89E-04
ATCG01040	ycf5	Hypothetical protein	−0.49	0.31	−2.76	3.72E-04
ATCG00140	atpH	ATPase III subunit	0.10	0.77	−2.68	2.23E-04
ATCG00040	matK	Maturase located in the trnK intron in the chloroplast genome	−0.32	0.68	−2.55	8.28E-08
ATCG00160	rps2	Chloroplast ribosomal protein S2	−0.39	0.65	−2.55	2.03E-04
ATCG00270	psbD	PSII reaction center protein D	−0.05	0.74	−2.54	4.03E-06
ATCG00680	psbB	PSII reaction center protein B	−0.11	0.87	−2.52	5.41E-07
ATCG00330	rps14	Chloroplast ribosomal protein S14	0.20	0.55	−2.48	5.54E-05
ATCG00420	ndhJ	NADH dehydrogenase subunit J	−0.31	0.63	−2.46	6.86E-05
ATCG00500	accD	Carboxyltransferase β-subunit of the acetyl-CoA carboxylase complex	−0.70	0.18	−2.32	3.90E-04
ATCG01050	ndhD	Subunit of a NAD(P)H dehydrogenase complex	−0.11	0.90	−2.26	8.12E-05
ATCG00380	rps4	Chloroplast ribosomal protein S4	−0.07	1.00	−2.19	2.25E-04
ATCG00120	atpA	ATP synthase subunit α	−0.20	0.92	−2.13	5.70E-06
ATCG01110	ndhH	49-kD plastid NAD(P)H dehydrogenase subunit H protein	−0.52	0.28	−2.08	3.45E-04
ATCG00170	rpoC2	DNA-directed RNA polymerase β′-subunit 2	−0.16	0.98	−1.87	8.94E-05
ATCG01130	ycf1.2	Hypothetical protein	−0.35	0.60	−1.81	2.03E-05
ATCG00150	atpI	Subunit of ATPase complex CF0	−0.36	0.59	−1.78	3.43E-04

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