RPKM refers to per kilobase of exon model per million mapped reads, which reflects the expression level of the gene. D, S, C, A, and H refer to response to drought, salt, cold, ABA, and high temperature stresses, respectively. GA, gibberellins; ET, ethylene; JA, jasmonic acid.
| ID . | Description . | RPKM . | Stress Response . | References . | |||
|---|---|---|---|---|---|---|---|
| 2-56D . | 2-56N . | ZH11D . | ZH11N . | ||||
| Os03t0815100-01 | NAC1 transcription factor | 119 | 32 | 77 | 19 | D, S, C, A | Hu et al., 2006 |
| Os02t0766700-01 | OsbZIP23 | 63 | 24 | 54 | 12 | D, S | Xiang et al., 2008 |
| Os05t0542500-02 | OsLEA3-1 | 22 | 0 | 27 | 1 | D, S, A | Xiao et al., 2007 |
| Os01t0869900-01 | SNF1-type serine-threonine protein kinase | 35 | 15 | 15 | 11 | D, S | Diédhiou et al., 2008 |
| Os02t0527300-01 | Heat shock transcription factor 3 | 80 | 21 | 24 | 13 | H | Wang et al., 2009 |
| Os03t0655400-01 | Similar to water stress-induced protein dehydrin | 846 | 156 | 499 | 262 | D | |
| Os02t0181300-01 | OsWRKY71 transcription factor | 212 | 68 | 149 | 65 | GA | Xie et al., 2006 |
| Os06t0216300-01 | OsOPR1 (12-oxo-phytodienoic acid reductase gene) | 43 | 10 | 5 | 2 | D, S, A | Agrawal et al., 2003 |
| Os03t0645900-00 | OsNCED3 | 21 | 1 | 5 | 0 | D | Hwang et al., 2010 |
| Os09t0287000-01 | Sub1C (Submergence1C), APETALA2/ERF domain ethylene-responsive transcriptional factor | 50 | 15 | 33 | 21 | ET, GA | Peña-Castro et al., 2011 |
| Os01t0135700-01 | OsCML16 (calmodulin-like protein16) | 32 | 12 | 28 | 9 | Boonburapong and Buaboocha, 2007 | |
| Os05t0455500-02 | Ɗ-1-pyrroline-5-carboxylate synthetase (OsP5CS) | 62 | 24 | 55 | 23 | D, C, H, S, A | Hien et al., 2003 |
| Os07t0515100-02 | Calcium-dependent protein kinase, OsCDPK2 | 115 | 63 | 58 | 56 | Frattini et al., 1999 | |
| Os01t0884300-01 | SNAC2 | 343 | 135 | 267 | 126 | D, C, S, A | Hu et al., 2008 |
| Os11t0126900-01 | SNAC10 | 36 | 6 | 45 | 4 | D, S, A | Jeong et al., 2010 |
| Os11t0184900-02 | OsNAC5 | 22 | 7 | 26 | 5 | D, S, C, A, JA | Takasaki et al., 2010 |
| Os12t0586100-01 | SNF1-type Ser-Thr protein kinase, SAPK8 | 155 | 77 | 29 | 143 | ||
| Os11t0454300-01 | Responsive to ABA21 (RAB21) | 19 | 0 | 30 | 0 | D, A | Mundy and Chua, 1988 |
| Os02t0669100-01 | Dehydration-stress inducible protein1 | 110 | 26 | 122 | 25 | D | |
| Os09t0486500-04 | OsSAP1 | 46 | 15 | 85 | 19 | D, S | Giri et al., 2011 |
| Os08t0504700-01 | OsSAP11 | 80 | 59 | 144 | 69 | D, S | Giri et al., 2011 |
| ID . | Description . | RPKM . | Stress Response . | References . | |||
|---|---|---|---|---|---|---|---|
| 2-56D . | 2-56N . | ZH11D . | ZH11N . | ||||
| Os03t0815100-01 | NAC1 transcription factor | 119 | 32 | 77 | 19 | D, S, C, A | Hu et al., 2006 |
| Os02t0766700-01 | OsbZIP23 | 63 | 24 | 54 | 12 | D, S | Xiang et al., 2008 |
| Os05t0542500-02 | OsLEA3-1 | 22 | 0 | 27 | 1 | D, S, A | Xiao et al., 2007 |
| Os01t0869900-01 | SNF1-type serine-threonine protein kinase | 35 | 15 | 15 | 11 | D, S | Diédhiou et al., 2008 |
| Os02t0527300-01 | Heat shock transcription factor 3 | 80 | 21 | 24 | 13 | H | Wang et al., 2009 |
| Os03t0655400-01 | Similar to water stress-induced protein dehydrin | 846 | 156 | 499 | 262 | D | |
| Os02t0181300-01 | OsWRKY71 transcription factor | 212 | 68 | 149 | 65 | GA | Xie et al., 2006 |
| Os06t0216300-01 | OsOPR1 (12-oxo-phytodienoic acid reductase gene) | 43 | 10 | 5 | 2 | D, S, A | Agrawal et al., 2003 |
| Os03t0645900-00 | OsNCED3 | 21 | 1 | 5 | 0 | D | Hwang et al., 2010 |
| Os09t0287000-01 | Sub1C (Submergence1C), APETALA2/ERF domain ethylene-responsive transcriptional factor | 50 | 15 | 33 | 21 | ET, GA | Peña-Castro et al., 2011 |
| Os01t0135700-01 | OsCML16 (calmodulin-like protein16) | 32 | 12 | 28 | 9 | Boonburapong and Buaboocha, 2007 | |
| Os05t0455500-02 | Ɗ-1-pyrroline-5-carboxylate synthetase (OsP5CS) | 62 | 24 | 55 | 23 | D, C, H, S, A | Hien et al., 2003 |
| Os07t0515100-02 | Calcium-dependent protein kinase, OsCDPK2 | 115 | 63 | 58 | 56 | Frattini et al., 1999 | |
| Os01t0884300-01 | SNAC2 | 343 | 135 | 267 | 126 | D, C, S, A | Hu et al., 2008 |
| Os11t0126900-01 | SNAC10 | 36 | 6 | 45 | 4 | D, S, A | Jeong et al., 2010 |
| Os11t0184900-02 | OsNAC5 | 22 | 7 | 26 | 5 | D, S, C, A, JA | Takasaki et al., 2010 |
| Os12t0586100-01 | SNF1-type Ser-Thr protein kinase, SAPK8 | 155 | 77 | 29 | 143 | ||
| Os11t0454300-01 | Responsive to ABA21 (RAB21) | 19 | 0 | 30 | 0 | D, A | Mundy and Chua, 1988 |
| Os02t0669100-01 | Dehydration-stress inducible protein1 | 110 | 26 | 122 | 25 | D | |
| Os09t0486500-04 | OsSAP1 | 46 | 15 | 85 | 19 | D, S | Giri et al., 2011 |
| Os08t0504700-01 | OsSAP11 | 80 | 59 | 144 | 69 | D, S | Giri et al., 2011 |
RPKM refers to per kilobase of exon model per million mapped reads, which reflects the expression level of the gene. D, S, C, A, and H refer to response to drought, salt, cold, ABA, and high temperature stresses, respectively. GA, gibberellins; ET, ethylene; JA, jasmonic acid.
| ID . | Description . | RPKM . | Stress Response . | References . | |||
|---|---|---|---|---|---|---|---|
| 2-56D . | 2-56N . | ZH11D . | ZH11N . | ||||
| Os03t0815100-01 | NAC1 transcription factor | 119 | 32 | 77 | 19 | D, S, C, A | Hu et al., 2006 |
| Os02t0766700-01 | OsbZIP23 | 63 | 24 | 54 | 12 | D, S | Xiang et al., 2008 |
| Os05t0542500-02 | OsLEA3-1 | 22 | 0 | 27 | 1 | D, S, A | Xiao et al., 2007 |
| Os01t0869900-01 | SNF1-type serine-threonine protein kinase | 35 | 15 | 15 | 11 | D, S | Diédhiou et al., 2008 |
| Os02t0527300-01 | Heat shock transcription factor 3 | 80 | 21 | 24 | 13 | H | Wang et al., 2009 |
| Os03t0655400-01 | Similar to water stress-induced protein dehydrin | 846 | 156 | 499 | 262 | D | |
| Os02t0181300-01 | OsWRKY71 transcription factor | 212 | 68 | 149 | 65 | GA | Xie et al., 2006 |
| Os06t0216300-01 | OsOPR1 (12-oxo-phytodienoic acid reductase gene) | 43 | 10 | 5 | 2 | D, S, A | Agrawal et al., 2003 |
| Os03t0645900-00 | OsNCED3 | 21 | 1 | 5 | 0 | D | Hwang et al., 2010 |
| Os09t0287000-01 | Sub1C (Submergence1C), APETALA2/ERF domain ethylene-responsive transcriptional factor | 50 | 15 | 33 | 21 | ET, GA | Peña-Castro et al., 2011 |
| Os01t0135700-01 | OsCML16 (calmodulin-like protein16) | 32 | 12 | 28 | 9 | Boonburapong and Buaboocha, 2007 | |
| Os05t0455500-02 | Ɗ-1-pyrroline-5-carboxylate synthetase (OsP5CS) | 62 | 24 | 55 | 23 | D, C, H, S, A | Hien et al., 2003 |
| Os07t0515100-02 | Calcium-dependent protein kinase, OsCDPK2 | 115 | 63 | 58 | 56 | Frattini et al., 1999 | |
| Os01t0884300-01 | SNAC2 | 343 | 135 | 267 | 126 | D, C, S, A | Hu et al., 2008 |
| Os11t0126900-01 | SNAC10 | 36 | 6 | 45 | 4 | D, S, A | Jeong et al., 2010 |
| Os11t0184900-02 | OsNAC5 | 22 | 7 | 26 | 5 | D, S, C, A, JA | Takasaki et al., 2010 |
| Os12t0586100-01 | SNF1-type Ser-Thr protein kinase, SAPK8 | 155 | 77 | 29 | 143 | ||
| Os11t0454300-01 | Responsive to ABA21 (RAB21) | 19 | 0 | 30 | 0 | D, A | Mundy and Chua, 1988 |
| Os02t0669100-01 | Dehydration-stress inducible protein1 | 110 | 26 | 122 | 25 | D | |
| Os09t0486500-04 | OsSAP1 | 46 | 15 | 85 | 19 | D, S | Giri et al., 2011 |
| Os08t0504700-01 | OsSAP11 | 80 | 59 | 144 | 69 | D, S | Giri et al., 2011 |
| ID . | Description . | RPKM . | Stress Response . | References . | |||
|---|---|---|---|---|---|---|---|
| 2-56D . | 2-56N . | ZH11D . | ZH11N . | ||||
| Os03t0815100-01 | NAC1 transcription factor | 119 | 32 | 77 | 19 | D, S, C, A | Hu et al., 2006 |
| Os02t0766700-01 | OsbZIP23 | 63 | 24 | 54 | 12 | D, S | Xiang et al., 2008 |
| Os05t0542500-02 | OsLEA3-1 | 22 | 0 | 27 | 1 | D, S, A | Xiao et al., 2007 |
| Os01t0869900-01 | SNF1-type serine-threonine protein kinase | 35 | 15 | 15 | 11 | D, S | Diédhiou et al., 2008 |
| Os02t0527300-01 | Heat shock transcription factor 3 | 80 | 21 | 24 | 13 | H | Wang et al., 2009 |
| Os03t0655400-01 | Similar to water stress-induced protein dehydrin | 846 | 156 | 499 | 262 | D | |
| Os02t0181300-01 | OsWRKY71 transcription factor | 212 | 68 | 149 | 65 | GA | Xie et al., 2006 |
| Os06t0216300-01 | OsOPR1 (12-oxo-phytodienoic acid reductase gene) | 43 | 10 | 5 | 2 | D, S, A | Agrawal et al., 2003 |
| Os03t0645900-00 | OsNCED3 | 21 | 1 | 5 | 0 | D | Hwang et al., 2010 |
| Os09t0287000-01 | Sub1C (Submergence1C), APETALA2/ERF domain ethylene-responsive transcriptional factor | 50 | 15 | 33 | 21 | ET, GA | Peña-Castro et al., 2011 |
| Os01t0135700-01 | OsCML16 (calmodulin-like protein16) | 32 | 12 | 28 | 9 | Boonburapong and Buaboocha, 2007 | |
| Os05t0455500-02 | Ɗ-1-pyrroline-5-carboxylate synthetase (OsP5CS) | 62 | 24 | 55 | 23 | D, C, H, S, A | Hien et al., 2003 |
| Os07t0515100-02 | Calcium-dependent protein kinase, OsCDPK2 | 115 | 63 | 58 | 56 | Frattini et al., 1999 | |
| Os01t0884300-01 | SNAC2 | 343 | 135 | 267 | 126 | D, C, S, A | Hu et al., 2008 |
| Os11t0126900-01 | SNAC10 | 36 | 6 | 45 | 4 | D, S, A | Jeong et al., 2010 |
| Os11t0184900-02 | OsNAC5 | 22 | 7 | 26 | 5 | D, S, C, A, JA | Takasaki et al., 2010 |
| Os12t0586100-01 | SNF1-type Ser-Thr protein kinase, SAPK8 | 155 | 77 | 29 | 143 | ||
| Os11t0454300-01 | Responsive to ABA21 (RAB21) | 19 | 0 | 30 | 0 | D, A | Mundy and Chua, 1988 |
| Os02t0669100-01 | Dehydration-stress inducible protein1 | 110 | 26 | 122 | 25 | D | |
| Os09t0486500-04 | OsSAP1 | 46 | 15 | 85 | 19 | D, S | Giri et al., 2011 |
| Os08t0504700-01 | OsSAP11 | 80 | 59 | 144 | 69 | D, S | Giri et al., 2011 |
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