Abiotic stress-related genes constitutively expressed in 35S:ERF1 transgenic plants were compared with wild-type plants. Genes in this table used in the ChIP assay are highlighted in boldface letters. Included in this table are genes with a directed role in abiotic stress or that are involved indirectly in abiotic stress responses (drought, salt, and heat stress). The number of plus signs indicates the number of sequences. Genes that have no DRE or GCC in their promoter regions are indicated by minus signs.
| Gene Symbol . | Gene Name . | Product Description . | Fold Change . | DREa . | GCCa . |
|---|---|---|---|---|---|
| All drought, salt, and heat stress | |||||
| At3g23240 | ERF1 | Ethylene response factor1 | 201.76 | ||
| At1g43160 | RAP2.6 | Ethylene response factor subfamily B-4 | 72.62 | ++ | − |
| At2g38340 | DREB19 | Dehydration response element-binding protein19 | 21.19 | − | + |
| At1g12610 | DDF1 | Dwarf and delayed flowering1 | 4.60 | ++ | − |
| At2g38470 | WRKY33 | WRKY DNA-binding protein33 | 2.79 | +++ | + |
| Both drought and salt stress | |||||
| At1g08930 | ERD6 | Early response to dehydration6 | 7.13 | − | − |
| At1g05680 | UGT74E2 | UDP-glucosyltransferase74E2 | 5.42 | ++++ | − |
| At5g13330 | RAP2.6L | Related to AP2 6L | 4.82 | − | − |
| At1g02930 | GSTF6 | Glutathione S-transferase ϕ6 | 3.94 | − | − |
| At2g17840 | ERD7 | Early response to dehydration7 | 3.82 | − | − |
| At1g27730 | STZ | Salt tolerance zinc finger | 3.15 | − | − |
| At2g17290 | CPK6 | Calcium-dependent protein kinase6 | 2.83 | +++ | − |
| At3g19580 | ZF2 | Zinc finger protein2 | 2.80 | − | ++ |
| At2g41010 | CAMBP25 | Calmodulin binding protein of 25 kD | 2.75 | − | − |
| At5g62470 | MYB96 | R2R3-type Myb transcription factor96 | 2.73 | − | − |
| At5g52300 | RD29B | Responsive to desiccation29B | 2.54 | ++ | − |
| At2g47190 | MYB2 | MYB transcription factor2 | 2.44 | − | − |
| At2g33380 | RD20 | Responsive to desiccation20 | 2.25 | ++ | − |
| At1g69270 | RPK1 | Receptor-like kinase1 | 2.21 | − | − |
| Both drought and heat stress | |||||
| At1g20440 | COR47 | Cold-regulated47 | 2.90 | +++ | − |
| At5g05410 | DREB2A | DRE-binding protein2A | 2.80 | ++ | − |
| At3g24500 | MBF1C | Multiprotein bridging factor1C | 2.64 | − | ++ |
| Both salt and heat stress | |||||
| At3g08720 | S6K2 | Ser/Thr protein kinase2 | 6.05 | − | − |
| At2g30250 | WRKY25 | WRKY DNA-binding protein25 | 5.88 | − | − |
| At1g59860 | –b | HSP20-like chaperone superfamily protein | 2.95 | + | + |
| At5g59820 | RHL41 | Responsive to high light41 | 2.25 | − | − |
| Drought stress only | |||||
| At2g40170 | GEA6 | Late embryogenesis abundant6 | 61.94 | +++ | + |
| At5g59220 | HAI1 | Highly ABA-induced PP2C gene1 | 9.93 | − | + |
| At5g06760 | LEA4-5 | Late embryogenesis abundant4-5 | 7.00 | ++ | + |
| At2g35930 | PUB23 | Cytoplasmically localized U-box domain-containing E3 ubiquitin ligase | 5.43 | − | − |
| At4g02380 | SAG21 | Senescence-associated gene21 | 5.37 | + | − |
| At1g52890 | ANAC019 | NAC domain-containing protein19 | 5.17 | ++ | + |
| At3g02480 | – | Late embryogenesis abundant protein family protein | 4.11 | + | − |
| At3g30775 | ERD5 | Early response to dehydration5 | 3.58 | + | − |
| At2g41430 | ERD15 | Early response to dehydration15 | 3.36 | + | − |
| At2g35300 | LEA18 | Late embryogenesis abundant18 | 2.61 | + | − |
| At1g32560 | LEA4-1 | Late embryogenesis abundant4-1 | 2.46 | + | − |
| At2g02800 | KIN2 | Kinase2 | 2.38 | + | − |
| At2g30870 | GSTF10 | Glutathione S-transferase ϕ10 | 2.37 | ++ | ++ |
| At4g25490 | CBF1 | C-repeat/DRE-binding factor1 | 2.35 | ++ | − |
| At2g18050 | HIS1-3 | Histone H1-3 | 2.31 | + | − |
| At1g22190 | RAP2.4 | Related to AP2 4 | 2.27 | + | − |
| At4g02200 | – | Drought-responsive family protein | 2.27 | − | − |
| At1g33560 | ADR1 | Activated disease resistance1 | 2.25 | +++ | − |
| At5g45340 | CYP707A3 | Cytochrome P450 | 2.21 | + | − |
| At1g20450 | ERD10 | Early response to dehydration10 | 2.20 | ++ | − |
| At1g76180 | ERD14 | Early response to dehydration14 | 2.19 | + | − |
| At3g15500 | ANAC055 | NAC domain-containing protein55 | 2.17 | + | + |
| At1g56280 | DI19 | Drought-induced19 | 2.13 | +++ | + |
| At3g06760 | – | Drought-responsive family protein | 2.03 | + | + |
| At1g32640 | MYC2 | MYC transcription factor2 | 2.01 | − | − |
| Salt stress only | |||||
| At1g73260 | KTI1 | Kunitz trypsin inhibitor1 | 23.14 | + | − |
| At4g11650 | OSM34 | Osmotin34 | 21.71 | + | − |
| At4g16260 | – | Glycosyl hydrolase superfamily protein | 20.22 | − | − |
| At4g12720 | NUDT7 | Nudix hydrolase homolog7 | 12.29 | − | − |
| At4g14630 | GLP9 | Germin-like protein9 | 9.03 | + | − |
| At3g23250 | MYB15 | MYB transcription factor15 | 8.38 | − | − |
| At5g54230 | MYB49 | MYB transcription factor49 | 7.96 | − | − |
| At5g62520 | SRO5 | Similar to RCD One5 | 7.61 | + | − |
| At1g25220 | ASB1 | Anthranilate synthase β-subunit1 | 5.04 | − | − |
| At1g02920 | GSTF7 | Glutathione S-transferase ϕ7 | 4.89 | + | − |
| At3g02140 | TMAC2 | Two or more ABREs-containing gene2 | 4.69 | − | − |
| At4g05100 | MYB74 | MYB transcription factor74 | 4.22 | − | − |
| At5g39610 | NAC6 | NAC domain transcription factor6 | 4.10 | − | + |
| At5g07440 | GDH2 | Glu dehydrogenase2 | 3.96 | − | − |
| At1g48000 | MYB112 | MYB transcription factor112 | 3.90 | + | + |
| At1g03220 | – | Eukaryotic aspartyl protease family protein | 3.60 | − | + |
| At1g28380 | NSL1 | Necrotic spotted lesions1 | 3.39 | + | + |
| At1g55450 | – | S-Adenosyl-l-Met-dependent methyltransferase superfamily protein | 3.36 | + | − |
| At3g25780 | AOC3 | Allene oxide cyclase3 | 3.18 | + | − |
| At3g57530 | CPK32 | Calcium-dependent protein kinase32 | 3.17 | + | + |
| At3g44540 | FAR4 | Fatty acid reductase4 | 3.16 | + | − |
| At4g21440 | MYB102 | MYB transcription factor102 | 3.14 | + | − |
| At1g03230 | – | Eukaryotic aspartyl protease family protein | 3.11 | − | − |
| At5g02020 | SIS | Salt-induced Ser rich | 3.07 | − | − |
| At5g67480 | BT4 | BTB and TAZ domain protein4 | 3.07 | +++ | − |
| At4g08500 | MEKK1 | MAPK/ERK kinase kinase1 | 2.82 | +++ | − |
| At3g48360 | BT2 | BTB and TAZ domain protein2 | 2.78 | ++ | − |
| At3g21780 | UGT71B6 | UDP-glucosyltransferase71B6 | 2.77 | ++ | − |
| At2g47730 | GSTF8 | Glutathione S-transferase ϕ8 | 2.68 | ++ | + |
| At5g44610 | MAP18 | Microtubule-associated protein18 | 2.53 | +++ | − |
| At5g43170 | ZF3 | Zinc finger protein3 | 2.35 | +++ | − |
| At4g37530 | – | Peroxidase superfamily protein | 2.26 | ++ | + |
| At4g02520 | GSTF2 | Glutathione S-transferase ϕ2 | 2.23 | +++ | − |
| At2g38380 | – | Peroxidase superfamily protein | 2.20 | ++ | + |
| At1g18570 | MYB51 | MYB transcription factor51 | 2.17 | ++ | + |
| At1g01140 | CIPK9 | CBL-interacting protein kinase9 | 2.15 | +++ | − |
| At5g67450 | ZF1 | Zinc finger protein1 | 2.10 | − | − |
| At1g50460 | HKL1 | Hexokinase-like1 | 2.09 | + | − |
| At5g24470 | VSP2 | Vegetative storage protein2 | 2.03 | + | − |
| Heat stress only | |||||
| At5g52640 | HSP90.1 | Heat shock protein90.1 | 8.61 | +++ | − |
| At5g51440 | – | HSP20-like chaperones superfamily protein | 8.49 | ++ | − |
| At5g57560 | XTH22 | Xyloglucan endotransglucosylase/hydrolase22 | 7.76 | − | + |
| At3g12580 | HSP70 | Heat shock protein70 | 7.47 | + | + |
| At5g03720 | HSFA3 | Heat shock factor A3 | 6.19 | + | − |
| At4g12400 | HOP3 | Carboxylate clamp-tetratricopeptide repeat proteins | 5.80 | ++ | − |
| At4g25200 | HSP23.6-MITO | Mitochondrion-localized small heat shock protein23.6 | 5.12 | + | − |
| At1g74310 | HSP101 | Heat shock protein101 | 4.99 | ++ | − |
| At1g07400 | – | HSP20-like chaperone superfamily protein | 4.65 | + | − |
| At5g07100 | WRKY26 | WRKY DNA-binding protein26 | 3.92 | + | + |
| At3g63350 | ATHSFA7B | Heat shock factor A7B | 3.81 | + | − |
| At5g47910 | RBOHD | NADPH/respiratory burst oxidase protein D | 3.41 | − | + |
| At1g21910 | DREB26 | Dehydration response element-binding protein26 | 3.29 | + | − |
| At3g08970 | TMS1 | Thermosensitive male sterile1 | 2.93 | − | ++ |
| At1g53540 | – | HSP20-like chaperone superfamily protein | 2.78 | + | + |
| At3g51910 | HSFA7A | Heat shock factor A7A | 2.74 | + | − |
| At2g26150 | HSFA2 | Heat shock factor A2 | 2.71 | + | − |
| At1g56410 | ERD2 | Early response to dehydration2 | 2.67 | + | − |
| At5g 12030 | HSP17.6A | Heat shock protein17.6A | 2.43 | − | + |
| At4g17250 | – | Heat acclimation | 2.33 | ++ | − |
| At5g37770 | CML24 | Calmodulin-like24 | 2.07 | + | − |
| Gene Symbol . | Gene Name . | Product Description . | Fold Change . | DREa . | GCCa . |
|---|---|---|---|---|---|
| All drought, salt, and heat stress | |||||
| At3g23240 | ERF1 | Ethylene response factor1 | 201.76 | ||
| At1g43160 | RAP2.6 | Ethylene response factor subfamily B-4 | 72.62 | ++ | − |
| At2g38340 | DREB19 | Dehydration response element-binding protein19 | 21.19 | − | + |
| At1g12610 | DDF1 | Dwarf and delayed flowering1 | 4.60 | ++ | − |
| At2g38470 | WRKY33 | WRKY DNA-binding protein33 | 2.79 | +++ | + |
| Both drought and salt stress | |||||
| At1g08930 | ERD6 | Early response to dehydration6 | 7.13 | − | − |
| At1g05680 | UGT74E2 | UDP-glucosyltransferase74E2 | 5.42 | ++++ | − |
| At5g13330 | RAP2.6L | Related to AP2 6L | 4.82 | − | − |
| At1g02930 | GSTF6 | Glutathione S-transferase ϕ6 | 3.94 | − | − |
| At2g17840 | ERD7 | Early response to dehydration7 | 3.82 | − | − |
| At1g27730 | STZ | Salt tolerance zinc finger | 3.15 | − | − |
| At2g17290 | CPK6 | Calcium-dependent protein kinase6 | 2.83 | +++ | − |
| At3g19580 | ZF2 | Zinc finger protein2 | 2.80 | − | ++ |
| At2g41010 | CAMBP25 | Calmodulin binding protein of 25 kD | 2.75 | − | − |
| At5g62470 | MYB96 | R2R3-type Myb transcription factor96 | 2.73 | − | − |
| At5g52300 | RD29B | Responsive to desiccation29B | 2.54 | ++ | − |
| At2g47190 | MYB2 | MYB transcription factor2 | 2.44 | − | − |
| At2g33380 | RD20 | Responsive to desiccation20 | 2.25 | ++ | − |
| At1g69270 | RPK1 | Receptor-like kinase1 | 2.21 | − | − |
| Both drought and heat stress | |||||
| At1g20440 | COR47 | Cold-regulated47 | 2.90 | +++ | − |
| At5g05410 | DREB2A | DRE-binding protein2A | 2.80 | ++ | − |
| At3g24500 | MBF1C | Multiprotein bridging factor1C | 2.64 | − | ++ |
| Both salt and heat stress | |||||
| At3g08720 | S6K2 | Ser/Thr protein kinase2 | 6.05 | − | − |
| At2g30250 | WRKY25 | WRKY DNA-binding protein25 | 5.88 | − | − |
| At1g59860 | –b | HSP20-like chaperone superfamily protein | 2.95 | + | + |
| At5g59820 | RHL41 | Responsive to high light41 | 2.25 | − | − |
| Drought stress only | |||||
| At2g40170 | GEA6 | Late embryogenesis abundant6 | 61.94 | +++ | + |
| At5g59220 | HAI1 | Highly ABA-induced PP2C gene1 | 9.93 | − | + |
| At5g06760 | LEA4-5 | Late embryogenesis abundant4-5 | 7.00 | ++ | + |
| At2g35930 | PUB23 | Cytoplasmically localized U-box domain-containing E3 ubiquitin ligase | 5.43 | − | − |
| At4g02380 | SAG21 | Senescence-associated gene21 | 5.37 | + | − |
| At1g52890 | ANAC019 | NAC domain-containing protein19 | 5.17 | ++ | + |
| At3g02480 | – | Late embryogenesis abundant protein family protein | 4.11 | + | − |
| At3g30775 | ERD5 | Early response to dehydration5 | 3.58 | + | − |
| At2g41430 | ERD15 | Early response to dehydration15 | 3.36 | + | − |
| At2g35300 | LEA18 | Late embryogenesis abundant18 | 2.61 | + | − |
| At1g32560 | LEA4-1 | Late embryogenesis abundant4-1 | 2.46 | + | − |
| At2g02800 | KIN2 | Kinase2 | 2.38 | + | − |
| At2g30870 | GSTF10 | Glutathione S-transferase ϕ10 | 2.37 | ++ | ++ |
| At4g25490 | CBF1 | C-repeat/DRE-binding factor1 | 2.35 | ++ | − |
| At2g18050 | HIS1-3 | Histone H1-3 | 2.31 | + | − |
| At1g22190 | RAP2.4 | Related to AP2 4 | 2.27 | + | − |
| At4g02200 | – | Drought-responsive family protein | 2.27 | − | − |
| At1g33560 | ADR1 | Activated disease resistance1 | 2.25 | +++ | − |
| At5g45340 | CYP707A3 | Cytochrome P450 | 2.21 | + | − |
| At1g20450 | ERD10 | Early response to dehydration10 | 2.20 | ++ | − |
| At1g76180 | ERD14 | Early response to dehydration14 | 2.19 | + | − |
| At3g15500 | ANAC055 | NAC domain-containing protein55 | 2.17 | + | + |
| At1g56280 | DI19 | Drought-induced19 | 2.13 | +++ | + |
| At3g06760 | – | Drought-responsive family protein | 2.03 | + | + |
| At1g32640 | MYC2 | MYC transcription factor2 | 2.01 | − | − |
| Salt stress only | |||||
| At1g73260 | KTI1 | Kunitz trypsin inhibitor1 | 23.14 | + | − |
| At4g11650 | OSM34 | Osmotin34 | 21.71 | + | − |
| At4g16260 | – | Glycosyl hydrolase superfamily protein | 20.22 | − | − |
| At4g12720 | NUDT7 | Nudix hydrolase homolog7 | 12.29 | − | − |
| At4g14630 | GLP9 | Germin-like protein9 | 9.03 | + | − |
| At3g23250 | MYB15 | MYB transcription factor15 | 8.38 | − | − |
| At5g54230 | MYB49 | MYB transcription factor49 | 7.96 | − | − |
| At5g62520 | SRO5 | Similar to RCD One5 | 7.61 | + | − |
| At1g25220 | ASB1 | Anthranilate synthase β-subunit1 | 5.04 | − | − |
| At1g02920 | GSTF7 | Glutathione S-transferase ϕ7 | 4.89 | + | − |
| At3g02140 | TMAC2 | Two or more ABREs-containing gene2 | 4.69 | − | − |
| At4g05100 | MYB74 | MYB transcription factor74 | 4.22 | − | − |
| At5g39610 | NAC6 | NAC domain transcription factor6 | 4.10 | − | + |
| At5g07440 | GDH2 | Glu dehydrogenase2 | 3.96 | − | − |
| At1g48000 | MYB112 | MYB transcription factor112 | 3.90 | + | + |
| At1g03220 | – | Eukaryotic aspartyl protease family protein | 3.60 | − | + |
| At1g28380 | NSL1 | Necrotic spotted lesions1 | 3.39 | + | + |
| At1g55450 | – | S-Adenosyl-l-Met-dependent methyltransferase superfamily protein | 3.36 | + | − |
| At3g25780 | AOC3 | Allene oxide cyclase3 | 3.18 | + | − |
| At3g57530 | CPK32 | Calcium-dependent protein kinase32 | 3.17 | + | + |
| At3g44540 | FAR4 | Fatty acid reductase4 | 3.16 | + | − |
| At4g21440 | MYB102 | MYB transcription factor102 | 3.14 | + | − |
| At1g03230 | – | Eukaryotic aspartyl protease family protein | 3.11 | − | − |
| At5g02020 | SIS | Salt-induced Ser rich | 3.07 | − | − |
| At5g67480 | BT4 | BTB and TAZ domain protein4 | 3.07 | +++ | − |
| At4g08500 | MEKK1 | MAPK/ERK kinase kinase1 | 2.82 | +++ | − |
| At3g48360 | BT2 | BTB and TAZ domain protein2 | 2.78 | ++ | − |
| At3g21780 | UGT71B6 | UDP-glucosyltransferase71B6 | 2.77 | ++ | − |
| At2g47730 | GSTF8 | Glutathione S-transferase ϕ8 | 2.68 | ++ | + |
| At5g44610 | MAP18 | Microtubule-associated protein18 | 2.53 | +++ | − |
| At5g43170 | ZF3 | Zinc finger protein3 | 2.35 | +++ | − |
| At4g37530 | – | Peroxidase superfamily protein | 2.26 | ++ | + |
| At4g02520 | GSTF2 | Glutathione S-transferase ϕ2 | 2.23 | +++ | − |
| At2g38380 | – | Peroxidase superfamily protein | 2.20 | ++ | + |
| At1g18570 | MYB51 | MYB transcription factor51 | 2.17 | ++ | + |
| At1g01140 | CIPK9 | CBL-interacting protein kinase9 | 2.15 | +++ | − |
| At5g67450 | ZF1 | Zinc finger protein1 | 2.10 | − | − |
| At1g50460 | HKL1 | Hexokinase-like1 | 2.09 | + | − |
| At5g24470 | VSP2 | Vegetative storage protein2 | 2.03 | + | − |
| Heat stress only | |||||
| At5g52640 | HSP90.1 | Heat shock protein90.1 | 8.61 | +++ | − |
| At5g51440 | – | HSP20-like chaperones superfamily protein | 8.49 | ++ | − |
| At5g57560 | XTH22 | Xyloglucan endotransglucosylase/hydrolase22 | 7.76 | − | + |
| At3g12580 | HSP70 | Heat shock protein70 | 7.47 | + | + |
| At5g03720 | HSFA3 | Heat shock factor A3 | 6.19 | + | − |
| At4g12400 | HOP3 | Carboxylate clamp-tetratricopeptide repeat proteins | 5.80 | ++ | − |
| At4g25200 | HSP23.6-MITO | Mitochondrion-localized small heat shock protein23.6 | 5.12 | + | − |
| At1g74310 | HSP101 | Heat shock protein101 | 4.99 | ++ | − |
| At1g07400 | – | HSP20-like chaperone superfamily protein | 4.65 | + | − |
| At5g07100 | WRKY26 | WRKY DNA-binding protein26 | 3.92 | + | + |
| At3g63350 | ATHSFA7B | Heat shock factor A7B | 3.81 | + | − |
| At5g47910 | RBOHD | NADPH/respiratory burst oxidase protein D | 3.41 | − | + |
| At1g21910 | DREB26 | Dehydration response element-binding protein26 | 3.29 | + | − |
| At3g08970 | TMS1 | Thermosensitive male sterile1 | 2.93 | − | ++ |
| At1g53540 | – | HSP20-like chaperone superfamily protein | 2.78 | + | + |
| At3g51910 | HSFA7A | Heat shock factor A7A | 2.74 | + | − |
| At2g26150 | HSFA2 | Heat shock factor A2 | 2.71 | + | − |
| At1g56410 | ERD2 | Early response to dehydration2 | 2.67 | + | − |
| At5g 12030 | HSP17.6A | Heat shock protein17.6A | 2.43 | − | + |
| At4g17250 | – | Heat acclimation | 2.33 | ++ | − |
| At5g37770 | CML24 | Calmodulin-like24 | 2.07 | + | − |
DRE (G/ACCGAC) or GCC (GCCGCC) in the 3,000-bp upstream region from the 5′ end of the longest complementary DNA. b–, Not applicable.
Abiotic stress-related genes constitutively expressed in 35S:ERF1 transgenic plants were compared with wild-type plants. Genes in this table used in the ChIP assay are highlighted in boldface letters. Included in this table are genes with a directed role in abiotic stress or that are involved indirectly in abiotic stress responses (drought, salt, and heat stress). The number of plus signs indicates the number of sequences. Genes that have no DRE or GCC in their promoter regions are indicated by minus signs.
| Gene Symbol . | Gene Name . | Product Description . | Fold Change . | DREa . | GCCa . |
|---|---|---|---|---|---|
| All drought, salt, and heat stress | |||||
| At3g23240 | ERF1 | Ethylene response factor1 | 201.76 | ||
| At1g43160 | RAP2.6 | Ethylene response factor subfamily B-4 | 72.62 | ++ | − |
| At2g38340 | DREB19 | Dehydration response element-binding protein19 | 21.19 | − | + |
| At1g12610 | DDF1 | Dwarf and delayed flowering1 | 4.60 | ++ | − |
| At2g38470 | WRKY33 | WRKY DNA-binding protein33 | 2.79 | +++ | + |
| Both drought and salt stress | |||||
| At1g08930 | ERD6 | Early response to dehydration6 | 7.13 | − | − |
| At1g05680 | UGT74E2 | UDP-glucosyltransferase74E2 | 5.42 | ++++ | − |
| At5g13330 | RAP2.6L | Related to AP2 6L | 4.82 | − | − |
| At1g02930 | GSTF6 | Glutathione S-transferase ϕ6 | 3.94 | − | − |
| At2g17840 | ERD7 | Early response to dehydration7 | 3.82 | − | − |
| At1g27730 | STZ | Salt tolerance zinc finger | 3.15 | − | − |
| At2g17290 | CPK6 | Calcium-dependent protein kinase6 | 2.83 | +++ | − |
| At3g19580 | ZF2 | Zinc finger protein2 | 2.80 | − | ++ |
| At2g41010 | CAMBP25 | Calmodulin binding protein of 25 kD | 2.75 | − | − |
| At5g62470 | MYB96 | R2R3-type Myb transcription factor96 | 2.73 | − | − |
| At5g52300 | RD29B | Responsive to desiccation29B | 2.54 | ++ | − |
| At2g47190 | MYB2 | MYB transcription factor2 | 2.44 | − | − |
| At2g33380 | RD20 | Responsive to desiccation20 | 2.25 | ++ | − |
| At1g69270 | RPK1 | Receptor-like kinase1 | 2.21 | − | − |
| Both drought and heat stress | |||||
| At1g20440 | COR47 | Cold-regulated47 | 2.90 | +++ | − |
| At5g05410 | DREB2A | DRE-binding protein2A | 2.80 | ++ | − |
| At3g24500 | MBF1C | Multiprotein bridging factor1C | 2.64 | − | ++ |
| Both salt and heat stress | |||||
| At3g08720 | S6K2 | Ser/Thr protein kinase2 | 6.05 | − | − |
| At2g30250 | WRKY25 | WRKY DNA-binding protein25 | 5.88 | − | − |
| At1g59860 | –b | HSP20-like chaperone superfamily protein | 2.95 | + | + |
| At5g59820 | RHL41 | Responsive to high light41 | 2.25 | − | − |
| Drought stress only | |||||
| At2g40170 | GEA6 | Late embryogenesis abundant6 | 61.94 | +++ | + |
| At5g59220 | HAI1 | Highly ABA-induced PP2C gene1 | 9.93 | − | + |
| At5g06760 | LEA4-5 | Late embryogenesis abundant4-5 | 7.00 | ++ | + |
| At2g35930 | PUB23 | Cytoplasmically localized U-box domain-containing E3 ubiquitin ligase | 5.43 | − | − |
| At4g02380 | SAG21 | Senescence-associated gene21 | 5.37 | + | − |
| At1g52890 | ANAC019 | NAC domain-containing protein19 | 5.17 | ++ | + |
| At3g02480 | – | Late embryogenesis abundant protein family protein | 4.11 | + | − |
| At3g30775 | ERD5 | Early response to dehydration5 | 3.58 | + | − |
| At2g41430 | ERD15 | Early response to dehydration15 | 3.36 | + | − |
| At2g35300 | LEA18 | Late embryogenesis abundant18 | 2.61 | + | − |
| At1g32560 | LEA4-1 | Late embryogenesis abundant4-1 | 2.46 | + | − |
| At2g02800 | KIN2 | Kinase2 | 2.38 | + | − |
| At2g30870 | GSTF10 | Glutathione S-transferase ϕ10 | 2.37 | ++ | ++ |
| At4g25490 | CBF1 | C-repeat/DRE-binding factor1 | 2.35 | ++ | − |
| At2g18050 | HIS1-3 | Histone H1-3 | 2.31 | + | − |
| At1g22190 | RAP2.4 | Related to AP2 4 | 2.27 | + | − |
| At4g02200 | – | Drought-responsive family protein | 2.27 | − | − |
| At1g33560 | ADR1 | Activated disease resistance1 | 2.25 | +++ | − |
| At5g45340 | CYP707A3 | Cytochrome P450 | 2.21 | + | − |
| At1g20450 | ERD10 | Early response to dehydration10 | 2.20 | ++ | − |
| At1g76180 | ERD14 | Early response to dehydration14 | 2.19 | + | − |
| At3g15500 | ANAC055 | NAC domain-containing protein55 | 2.17 | + | + |
| At1g56280 | DI19 | Drought-induced19 | 2.13 | +++ | + |
| At3g06760 | – | Drought-responsive family protein | 2.03 | + | + |
| At1g32640 | MYC2 | MYC transcription factor2 | 2.01 | − | − |
| Salt stress only | |||||
| At1g73260 | KTI1 | Kunitz trypsin inhibitor1 | 23.14 | + | − |
| At4g11650 | OSM34 | Osmotin34 | 21.71 | + | − |
| At4g16260 | – | Glycosyl hydrolase superfamily protein | 20.22 | − | − |
| At4g12720 | NUDT7 | Nudix hydrolase homolog7 | 12.29 | − | − |
| At4g14630 | GLP9 | Germin-like protein9 | 9.03 | + | − |
| At3g23250 | MYB15 | MYB transcription factor15 | 8.38 | − | − |
| At5g54230 | MYB49 | MYB transcription factor49 | 7.96 | − | − |
| At5g62520 | SRO5 | Similar to RCD One5 | 7.61 | + | − |
| At1g25220 | ASB1 | Anthranilate synthase β-subunit1 | 5.04 | − | − |
| At1g02920 | GSTF7 | Glutathione S-transferase ϕ7 | 4.89 | + | − |
| At3g02140 | TMAC2 | Two or more ABREs-containing gene2 | 4.69 | − | − |
| At4g05100 | MYB74 | MYB transcription factor74 | 4.22 | − | − |
| At5g39610 | NAC6 | NAC domain transcription factor6 | 4.10 | − | + |
| At5g07440 | GDH2 | Glu dehydrogenase2 | 3.96 | − | − |
| At1g48000 | MYB112 | MYB transcription factor112 | 3.90 | + | + |
| At1g03220 | – | Eukaryotic aspartyl protease family protein | 3.60 | − | + |
| At1g28380 | NSL1 | Necrotic spotted lesions1 | 3.39 | + | + |
| At1g55450 | – | S-Adenosyl-l-Met-dependent methyltransferase superfamily protein | 3.36 | + | − |
| At3g25780 | AOC3 | Allene oxide cyclase3 | 3.18 | + | − |
| At3g57530 | CPK32 | Calcium-dependent protein kinase32 | 3.17 | + | + |
| At3g44540 | FAR4 | Fatty acid reductase4 | 3.16 | + | − |
| At4g21440 | MYB102 | MYB transcription factor102 | 3.14 | + | − |
| At1g03230 | – | Eukaryotic aspartyl protease family protein | 3.11 | − | − |
| At5g02020 | SIS | Salt-induced Ser rich | 3.07 | − | − |
| At5g67480 | BT4 | BTB and TAZ domain protein4 | 3.07 | +++ | − |
| At4g08500 | MEKK1 | MAPK/ERK kinase kinase1 | 2.82 | +++ | − |
| At3g48360 | BT2 | BTB and TAZ domain protein2 | 2.78 | ++ | − |
| At3g21780 | UGT71B6 | UDP-glucosyltransferase71B6 | 2.77 | ++ | − |
| At2g47730 | GSTF8 | Glutathione S-transferase ϕ8 | 2.68 | ++ | + |
| At5g44610 | MAP18 | Microtubule-associated protein18 | 2.53 | +++ | − |
| At5g43170 | ZF3 | Zinc finger protein3 | 2.35 | +++ | − |
| At4g37530 | – | Peroxidase superfamily protein | 2.26 | ++ | + |
| At4g02520 | GSTF2 | Glutathione S-transferase ϕ2 | 2.23 | +++ | − |
| At2g38380 | – | Peroxidase superfamily protein | 2.20 | ++ | + |
| At1g18570 | MYB51 | MYB transcription factor51 | 2.17 | ++ | + |
| At1g01140 | CIPK9 | CBL-interacting protein kinase9 | 2.15 | +++ | − |
| At5g67450 | ZF1 | Zinc finger protein1 | 2.10 | − | − |
| At1g50460 | HKL1 | Hexokinase-like1 | 2.09 | + | − |
| At5g24470 | VSP2 | Vegetative storage protein2 | 2.03 | + | − |
| Heat stress only | |||||
| At5g52640 | HSP90.1 | Heat shock protein90.1 | 8.61 | +++ | − |
| At5g51440 | – | HSP20-like chaperones superfamily protein | 8.49 | ++ | − |
| At5g57560 | XTH22 | Xyloglucan endotransglucosylase/hydrolase22 | 7.76 | − | + |
| At3g12580 | HSP70 | Heat shock protein70 | 7.47 | + | + |
| At5g03720 | HSFA3 | Heat shock factor A3 | 6.19 | + | − |
| At4g12400 | HOP3 | Carboxylate clamp-tetratricopeptide repeat proteins | 5.80 | ++ | − |
| At4g25200 | HSP23.6-MITO | Mitochondrion-localized small heat shock protein23.6 | 5.12 | + | − |
| At1g74310 | HSP101 | Heat shock protein101 | 4.99 | ++ | − |
| At1g07400 | – | HSP20-like chaperone superfamily protein | 4.65 | + | − |
| At5g07100 | WRKY26 | WRKY DNA-binding protein26 | 3.92 | + | + |
| At3g63350 | ATHSFA7B | Heat shock factor A7B | 3.81 | + | − |
| At5g47910 | RBOHD | NADPH/respiratory burst oxidase protein D | 3.41 | − | + |
| At1g21910 | DREB26 | Dehydration response element-binding protein26 | 3.29 | + | − |
| At3g08970 | TMS1 | Thermosensitive male sterile1 | 2.93 | − | ++ |
| At1g53540 | – | HSP20-like chaperone superfamily protein | 2.78 | + | + |
| At3g51910 | HSFA7A | Heat shock factor A7A | 2.74 | + | − |
| At2g26150 | HSFA2 | Heat shock factor A2 | 2.71 | + | − |
| At1g56410 | ERD2 | Early response to dehydration2 | 2.67 | + | − |
| At5g 12030 | HSP17.6A | Heat shock protein17.6A | 2.43 | − | + |
| At4g17250 | – | Heat acclimation | 2.33 | ++ | − |
| At5g37770 | CML24 | Calmodulin-like24 | 2.07 | + | − |
| Gene Symbol . | Gene Name . | Product Description . | Fold Change . | DREa . | GCCa . |
|---|---|---|---|---|---|
| All drought, salt, and heat stress | |||||
| At3g23240 | ERF1 | Ethylene response factor1 | 201.76 | ||
| At1g43160 | RAP2.6 | Ethylene response factor subfamily B-4 | 72.62 | ++ | − |
| At2g38340 | DREB19 | Dehydration response element-binding protein19 | 21.19 | − | + |
| At1g12610 | DDF1 | Dwarf and delayed flowering1 | 4.60 | ++ | − |
| At2g38470 | WRKY33 | WRKY DNA-binding protein33 | 2.79 | +++ | + |
| Both drought and salt stress | |||||
| At1g08930 | ERD6 | Early response to dehydration6 | 7.13 | − | − |
| At1g05680 | UGT74E2 | UDP-glucosyltransferase74E2 | 5.42 | ++++ | − |
| At5g13330 | RAP2.6L | Related to AP2 6L | 4.82 | − | − |
| At1g02930 | GSTF6 | Glutathione S-transferase ϕ6 | 3.94 | − | − |
| At2g17840 | ERD7 | Early response to dehydration7 | 3.82 | − | − |
| At1g27730 | STZ | Salt tolerance zinc finger | 3.15 | − | − |
| At2g17290 | CPK6 | Calcium-dependent protein kinase6 | 2.83 | +++ | − |
| At3g19580 | ZF2 | Zinc finger protein2 | 2.80 | − | ++ |
| At2g41010 | CAMBP25 | Calmodulin binding protein of 25 kD | 2.75 | − | − |
| At5g62470 | MYB96 | R2R3-type Myb transcription factor96 | 2.73 | − | − |
| At5g52300 | RD29B | Responsive to desiccation29B | 2.54 | ++ | − |
| At2g47190 | MYB2 | MYB transcription factor2 | 2.44 | − | − |
| At2g33380 | RD20 | Responsive to desiccation20 | 2.25 | ++ | − |
| At1g69270 | RPK1 | Receptor-like kinase1 | 2.21 | − | − |
| Both drought and heat stress | |||||
| At1g20440 | COR47 | Cold-regulated47 | 2.90 | +++ | − |
| At5g05410 | DREB2A | DRE-binding protein2A | 2.80 | ++ | − |
| At3g24500 | MBF1C | Multiprotein bridging factor1C | 2.64 | − | ++ |
| Both salt and heat stress | |||||
| At3g08720 | S6K2 | Ser/Thr protein kinase2 | 6.05 | − | − |
| At2g30250 | WRKY25 | WRKY DNA-binding protein25 | 5.88 | − | − |
| At1g59860 | –b | HSP20-like chaperone superfamily protein | 2.95 | + | + |
| At5g59820 | RHL41 | Responsive to high light41 | 2.25 | − | − |
| Drought stress only | |||||
| At2g40170 | GEA6 | Late embryogenesis abundant6 | 61.94 | +++ | + |
| At5g59220 | HAI1 | Highly ABA-induced PP2C gene1 | 9.93 | − | + |
| At5g06760 | LEA4-5 | Late embryogenesis abundant4-5 | 7.00 | ++ | + |
| At2g35930 | PUB23 | Cytoplasmically localized U-box domain-containing E3 ubiquitin ligase | 5.43 | − | − |
| At4g02380 | SAG21 | Senescence-associated gene21 | 5.37 | + | − |
| At1g52890 | ANAC019 | NAC domain-containing protein19 | 5.17 | ++ | + |
| At3g02480 | – | Late embryogenesis abundant protein family protein | 4.11 | + | − |
| At3g30775 | ERD5 | Early response to dehydration5 | 3.58 | + | − |
| At2g41430 | ERD15 | Early response to dehydration15 | 3.36 | + | − |
| At2g35300 | LEA18 | Late embryogenesis abundant18 | 2.61 | + | − |
| At1g32560 | LEA4-1 | Late embryogenesis abundant4-1 | 2.46 | + | − |
| At2g02800 | KIN2 | Kinase2 | 2.38 | + | − |
| At2g30870 | GSTF10 | Glutathione S-transferase ϕ10 | 2.37 | ++ | ++ |
| At4g25490 | CBF1 | C-repeat/DRE-binding factor1 | 2.35 | ++ | − |
| At2g18050 | HIS1-3 | Histone H1-3 | 2.31 | + | − |
| At1g22190 | RAP2.4 | Related to AP2 4 | 2.27 | + | − |
| At4g02200 | – | Drought-responsive family protein | 2.27 | − | − |
| At1g33560 | ADR1 | Activated disease resistance1 | 2.25 | +++ | − |
| At5g45340 | CYP707A3 | Cytochrome P450 | 2.21 | + | − |
| At1g20450 | ERD10 | Early response to dehydration10 | 2.20 | ++ | − |
| At1g76180 | ERD14 | Early response to dehydration14 | 2.19 | + | − |
| At3g15500 | ANAC055 | NAC domain-containing protein55 | 2.17 | + | + |
| At1g56280 | DI19 | Drought-induced19 | 2.13 | +++ | + |
| At3g06760 | – | Drought-responsive family protein | 2.03 | + | + |
| At1g32640 | MYC2 | MYC transcription factor2 | 2.01 | − | − |
| Salt stress only | |||||
| At1g73260 | KTI1 | Kunitz trypsin inhibitor1 | 23.14 | + | − |
| At4g11650 | OSM34 | Osmotin34 | 21.71 | + | − |
| At4g16260 | – | Glycosyl hydrolase superfamily protein | 20.22 | − | − |
| At4g12720 | NUDT7 | Nudix hydrolase homolog7 | 12.29 | − | − |
| At4g14630 | GLP9 | Germin-like protein9 | 9.03 | + | − |
| At3g23250 | MYB15 | MYB transcription factor15 | 8.38 | − | − |
| At5g54230 | MYB49 | MYB transcription factor49 | 7.96 | − | − |
| At5g62520 | SRO5 | Similar to RCD One5 | 7.61 | + | − |
| At1g25220 | ASB1 | Anthranilate synthase β-subunit1 | 5.04 | − | − |
| At1g02920 | GSTF7 | Glutathione S-transferase ϕ7 | 4.89 | + | − |
| At3g02140 | TMAC2 | Two or more ABREs-containing gene2 | 4.69 | − | − |
| At4g05100 | MYB74 | MYB transcription factor74 | 4.22 | − | − |
| At5g39610 | NAC6 | NAC domain transcription factor6 | 4.10 | − | + |
| At5g07440 | GDH2 | Glu dehydrogenase2 | 3.96 | − | − |
| At1g48000 | MYB112 | MYB transcription factor112 | 3.90 | + | + |
| At1g03220 | – | Eukaryotic aspartyl protease family protein | 3.60 | − | + |
| At1g28380 | NSL1 | Necrotic spotted lesions1 | 3.39 | + | + |
| At1g55450 | – | S-Adenosyl-l-Met-dependent methyltransferase superfamily protein | 3.36 | + | − |
| At3g25780 | AOC3 | Allene oxide cyclase3 | 3.18 | + | − |
| At3g57530 | CPK32 | Calcium-dependent protein kinase32 | 3.17 | + | + |
| At3g44540 | FAR4 | Fatty acid reductase4 | 3.16 | + | − |
| At4g21440 | MYB102 | MYB transcription factor102 | 3.14 | + | − |
| At1g03230 | – | Eukaryotic aspartyl protease family protein | 3.11 | − | − |
| At5g02020 | SIS | Salt-induced Ser rich | 3.07 | − | − |
| At5g67480 | BT4 | BTB and TAZ domain protein4 | 3.07 | +++ | − |
| At4g08500 | MEKK1 | MAPK/ERK kinase kinase1 | 2.82 | +++ | − |
| At3g48360 | BT2 | BTB and TAZ domain protein2 | 2.78 | ++ | − |
| At3g21780 | UGT71B6 | UDP-glucosyltransferase71B6 | 2.77 | ++ | − |
| At2g47730 | GSTF8 | Glutathione S-transferase ϕ8 | 2.68 | ++ | + |
| At5g44610 | MAP18 | Microtubule-associated protein18 | 2.53 | +++ | − |
| At5g43170 | ZF3 | Zinc finger protein3 | 2.35 | +++ | − |
| At4g37530 | – | Peroxidase superfamily protein | 2.26 | ++ | + |
| At4g02520 | GSTF2 | Glutathione S-transferase ϕ2 | 2.23 | +++ | − |
| At2g38380 | – | Peroxidase superfamily protein | 2.20 | ++ | + |
| At1g18570 | MYB51 | MYB transcription factor51 | 2.17 | ++ | + |
| At1g01140 | CIPK9 | CBL-interacting protein kinase9 | 2.15 | +++ | − |
| At5g67450 | ZF1 | Zinc finger protein1 | 2.10 | − | − |
| At1g50460 | HKL1 | Hexokinase-like1 | 2.09 | + | − |
| At5g24470 | VSP2 | Vegetative storage protein2 | 2.03 | + | − |
| Heat stress only | |||||
| At5g52640 | HSP90.1 | Heat shock protein90.1 | 8.61 | +++ | − |
| At5g51440 | – | HSP20-like chaperones superfamily protein | 8.49 | ++ | − |
| At5g57560 | XTH22 | Xyloglucan endotransglucosylase/hydrolase22 | 7.76 | − | + |
| At3g12580 | HSP70 | Heat shock protein70 | 7.47 | + | + |
| At5g03720 | HSFA3 | Heat shock factor A3 | 6.19 | + | − |
| At4g12400 | HOP3 | Carboxylate clamp-tetratricopeptide repeat proteins | 5.80 | ++ | − |
| At4g25200 | HSP23.6-MITO | Mitochondrion-localized small heat shock protein23.6 | 5.12 | + | − |
| At1g74310 | HSP101 | Heat shock protein101 | 4.99 | ++ | − |
| At1g07400 | – | HSP20-like chaperone superfamily protein | 4.65 | + | − |
| At5g07100 | WRKY26 | WRKY DNA-binding protein26 | 3.92 | + | + |
| At3g63350 | ATHSFA7B | Heat shock factor A7B | 3.81 | + | − |
| At5g47910 | RBOHD | NADPH/respiratory burst oxidase protein D | 3.41 | − | + |
| At1g21910 | DREB26 | Dehydration response element-binding protein26 | 3.29 | + | − |
| At3g08970 | TMS1 | Thermosensitive male sterile1 | 2.93 | − | ++ |
| At1g53540 | – | HSP20-like chaperone superfamily protein | 2.78 | + | + |
| At3g51910 | HSFA7A | Heat shock factor A7A | 2.74 | + | − |
| At2g26150 | HSFA2 | Heat shock factor A2 | 2.71 | + | − |
| At1g56410 | ERD2 | Early response to dehydration2 | 2.67 | + | − |
| At5g 12030 | HSP17.6A | Heat shock protein17.6A | 2.43 | − | + |
| At4g17250 | – | Heat acclimation | 2.33 | ++ | − |
| At5g37770 | CML24 | Calmodulin-like24 | 2.07 | + | − |
DRE (G/ACCGAC) or GCC (GCCGCC) in the 3,000-bp upstream region from the 5′ end of the longest complementary DNA. b–, Not applicable.
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