Primers used for construction of the xyr1 expression cassette and RNAi vector
Primers . | Sequences (5′–3′)a . | Notes . |
---|---|---|
Ppdc-F | ATGAAAGGAGGGAGCATTCTTCGAC | For construction of the xyr1 expression cassette |
Ppdc-R | AGCGACGGAGAGGATTGGACAACATGATTGTGCTGTAGCTGCGCTGCTTT | |
xyr-F | AAAGCAGCGCAGCTACAGCACAATCATGTTGTCCAATCCTCTCCGTCGCT | |
xyr-R | CTACCCGGTCAGACTTCATGCCGGGTTAGAGGGCCAGACCGGTTCCGTTA | |
Tpdc-F | TAACGGAACCGGTCTGGCCCTCTAACCCGGCATGAAGTCTGACCGG | |
Tpdc-R | TTGCCTTTTGAGCTGGCGTCTT | |
Ppa-F | CGGGGTACCATGAAAGGAGGGAGCATTCTTCGAC | For construction of the RNAi vector for silencing the ace1 gene |
Ppa-R | CCGTAGGTAGCGAGCCAATCGATTGTGCTGTAGCTGCGCTGCTTT | |
aces-F | CAGCGCAGCTACAGCACAATCGATTGGCTCGCTACCTACGG | |
aces-R | TACAGCCAAAGTCAAAACCCGTTGAAGATGTCGGGCTGTG | |
it-F | CACAGCCCGACATCTTCAACGGGTTTTGACTTTGGCTGTA | |
it-R | CTAGTCTAGAGTTCTTCAACGGAGGATAAA | |
acea-F | CTAGTCTAGAGTTGAAGATGTCGGGCTGTG | |
acea-R | CCGGTCAGACTTCATGCCGGGGATTGGCTCGCTACCTACGG | |
Tpa-F | CCGTAGGTAGCGAGCCAATCCCCGGCATGAAGTCTGACCGG | |
Tpa-R | ACCCAAGCTTTTGCCTTTTGAGCTGGCGTCTT |
Primers . | Sequences (5′–3′)a . | Notes . |
---|---|---|
Ppdc-F | ATGAAAGGAGGGAGCATTCTTCGAC | For construction of the xyr1 expression cassette |
Ppdc-R | AGCGACGGAGAGGATTGGACAACATGATTGTGCTGTAGCTGCGCTGCTTT | |
xyr-F | AAAGCAGCGCAGCTACAGCACAATCATGTTGTCCAATCCTCTCCGTCGCT | |
xyr-R | CTACCCGGTCAGACTTCATGCCGGGTTAGAGGGCCAGACCGGTTCCGTTA | |
Tpdc-F | TAACGGAACCGGTCTGGCCCTCTAACCCGGCATGAAGTCTGACCGG | |
Tpdc-R | TTGCCTTTTGAGCTGGCGTCTT | |
Ppa-F | CGGGGTACCATGAAAGGAGGGAGCATTCTTCGAC | For construction of the RNAi vector for silencing the ace1 gene |
Ppa-R | CCGTAGGTAGCGAGCCAATCGATTGTGCTGTAGCTGCGCTGCTTT | |
aces-F | CAGCGCAGCTACAGCACAATCGATTGGCTCGCTACCTACGG | |
aces-R | TACAGCCAAAGTCAAAACCCGTTGAAGATGTCGGGCTGTG | |
it-F | CACAGCCCGACATCTTCAACGGGTTTTGACTTTGGCTGTA | |
it-R | CTAGTCTAGAGTTCTTCAACGGAGGATAAA | |
acea-F | CTAGTCTAGAGTTGAAGATGTCGGGCTGTG | |
acea-R | CCGGTCAGACTTCATGCCGGGGATTGGCTCGCTACCTACGG | |
Tpa-F | CCGTAGGTAGCGAGCCAATCCCCGGCATGAAGTCTGACCGG | |
Tpa-R | ACCCAAGCTTTTGCCTTTTGAGCTGGCGTCTT |
aRestriction sites are underlined; overlapping regions in primers are double underlined
Primers used for construction of the xyr1 expression cassette and RNAi vector
Primers . | Sequences (5′–3′)a . | Notes . |
---|---|---|
Ppdc-F | ATGAAAGGAGGGAGCATTCTTCGAC | For construction of the xyr1 expression cassette |
Ppdc-R | AGCGACGGAGAGGATTGGACAACATGATTGTGCTGTAGCTGCGCTGCTTT | |
xyr-F | AAAGCAGCGCAGCTACAGCACAATCATGTTGTCCAATCCTCTCCGTCGCT | |
xyr-R | CTACCCGGTCAGACTTCATGCCGGGTTAGAGGGCCAGACCGGTTCCGTTA | |
Tpdc-F | TAACGGAACCGGTCTGGCCCTCTAACCCGGCATGAAGTCTGACCGG | |
Tpdc-R | TTGCCTTTTGAGCTGGCGTCTT | |
Ppa-F | CGGGGTACCATGAAAGGAGGGAGCATTCTTCGAC | For construction of the RNAi vector for silencing the ace1 gene |
Ppa-R | CCGTAGGTAGCGAGCCAATCGATTGTGCTGTAGCTGCGCTGCTTT | |
aces-F | CAGCGCAGCTACAGCACAATCGATTGGCTCGCTACCTACGG | |
aces-R | TACAGCCAAAGTCAAAACCCGTTGAAGATGTCGGGCTGTG | |
it-F | CACAGCCCGACATCTTCAACGGGTTTTGACTTTGGCTGTA | |
it-R | CTAGTCTAGAGTTCTTCAACGGAGGATAAA | |
acea-F | CTAGTCTAGAGTTGAAGATGTCGGGCTGTG | |
acea-R | CCGGTCAGACTTCATGCCGGGGATTGGCTCGCTACCTACGG | |
Tpa-F | CCGTAGGTAGCGAGCCAATCCCCGGCATGAAGTCTGACCGG | |
Tpa-R | ACCCAAGCTTTTGCCTTTTGAGCTGGCGTCTT |
Primers . | Sequences (5′–3′)a . | Notes . |
---|---|---|
Ppdc-F | ATGAAAGGAGGGAGCATTCTTCGAC | For construction of the xyr1 expression cassette |
Ppdc-R | AGCGACGGAGAGGATTGGACAACATGATTGTGCTGTAGCTGCGCTGCTTT | |
xyr-F | AAAGCAGCGCAGCTACAGCACAATCATGTTGTCCAATCCTCTCCGTCGCT | |
xyr-R | CTACCCGGTCAGACTTCATGCCGGGTTAGAGGGCCAGACCGGTTCCGTTA | |
Tpdc-F | TAACGGAACCGGTCTGGCCCTCTAACCCGGCATGAAGTCTGACCGG | |
Tpdc-R | TTGCCTTTTGAGCTGGCGTCTT | |
Ppa-F | CGGGGTACCATGAAAGGAGGGAGCATTCTTCGAC | For construction of the RNAi vector for silencing the ace1 gene |
Ppa-R | CCGTAGGTAGCGAGCCAATCGATTGTGCTGTAGCTGCGCTGCTTT | |
aces-F | CAGCGCAGCTACAGCACAATCGATTGGCTCGCTACCTACGG | |
aces-R | TACAGCCAAAGTCAAAACCCGTTGAAGATGTCGGGCTGTG | |
it-F | CACAGCCCGACATCTTCAACGGGTTTTGACTTTGGCTGTA | |
it-R | CTAGTCTAGAGTTCTTCAACGGAGGATAAA | |
acea-F | CTAGTCTAGAGTTGAAGATGTCGGGCTGTG | |
acea-R | CCGGTCAGACTTCATGCCGGGGATTGGCTCGCTACCTACGG | |
Tpa-F | CCGTAGGTAGCGAGCCAATCCCCGGCATGAAGTCTGACCGG | |
Tpa-R | ACCCAAGCTTTTGCCTTTTGAGCTGGCGTCTT |
aRestriction sites are underlined; overlapping regions in primers are double underlined
Schematic representation of the xyr1 expression cassette (a) and RNAi vector (b). Ppdc: Trichoderma reesei pdc promoter; ace1 (right arrow): 507-bp ace1 coding sequence; IT: 249-bp spacer fragment including intron 2 of the T. reesei eg2 gene; ace1 (left arrow): antisense strand of the 507-bp ace1 coding sequence; Tpdc: T. reesei pdc terminator. The line indicates the probe for Southern blot
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