Promoter and terminator regions of the pdc gene were acquired from the T. reesei genome sequence (http://genome.jgi-psf.org/Trire2/Trire2.home.html). The pdc promoter (Ppdc, 1305 bp, scaffold 8:106110–107414 bp), the pdc terminator (Tpdc, 721 bp, scaffold 8:103465–104185 bp), and the xyr1 gene (GenBank accession no. AF479644) were PCR-amplified from T. reesei QM9414 genomic DNA using primers Ppdc-F and Ppdc-R, Tpdc-F and Tpdc-R, and xyr-F and xyr-R (Table 1), respectively. Amplified Ppdc, xyr1, and Tpdc fragments were fused by overlap extension PCR using primers Ppdc-F and Tpdc-R, generating a xyr1 expression cassette. This expression cassette was cloned into a pMD 18-T Vector (Takara, Dalian, China), yielding the plasmid pPDC-XYR (Fig. 1a). This plasmid was inserted into the genome of T. reesei RUT C30 for constitutive expression of the xyr1 gene.

Primers used for construction of the xyr1 expression cassette and RNAi vector

PrimersSequences (5′–3′)aNotes
Ppdc-FATGAAAGGAGGGAGCATTCTTCGACFor construction of the xyr1 expression cassette
Ppdc-RAGCGACGGAGAGGATTGGACAACATGATTGTGCTGTAGCTGCGCTGCTTT
xyr-FAAAGCAGCGCAGCTACAGCACAATCATGTTGTCCAATCCTCTCCGTCGCT
xyr-RCTACCCGGTCAGACTTCATGCCGGGTTAGAGGGCCAGACCGGTTCCGTTA
Tpdc-FTAACGGAACCGGTCTGGCCCTCTAACCCGGCATGAAGTCTGACCGG
Tpdc-RTTGCCTTTTGAGCTGGCGTCTT
Ppa-FCGGGGTACCATGAAAGGAGGGAGCATTCTTCGACFor construction of the RNAi vector for silencing the ace1 gene
Ppa-RCCGTAGGTAGCGAGCCAATCGATTGTGCTGTAGCTGCGCTGCTTT
aces-FCAGCGCAGCTACAGCACAATCGATTGGCTCGCTACCTACGG
aces-RTACAGCCAAAGTCAAAACCCGTTGAAGATGTCGGGCTGTG
it-FCACAGCCCGACATCTTCAACGGGTTTTGACTTTGGCTGTA
it-RCTAGTCTAGAGTTCTTCAACGGAGGATAAA
acea-FCTAGTCTAGAGTTGAAGATGTCGGGCTGTG
acea-RCCGGTCAGACTTCATGCCGGGGATTGGCTCGCTACCTACGG
Tpa-FCCGTAGGTAGCGAGCCAATCCCCGGCATGAAGTCTGACCGG
Tpa-RACCCAAGCTTTTGCCTTTTGAGCTGGCGTCTT
PrimersSequences (5′–3′)aNotes
Ppdc-FATGAAAGGAGGGAGCATTCTTCGACFor construction of the xyr1 expression cassette
Ppdc-RAGCGACGGAGAGGATTGGACAACATGATTGTGCTGTAGCTGCGCTGCTTT
xyr-FAAAGCAGCGCAGCTACAGCACAATCATGTTGTCCAATCCTCTCCGTCGCT
xyr-RCTACCCGGTCAGACTTCATGCCGGGTTAGAGGGCCAGACCGGTTCCGTTA
Tpdc-FTAACGGAACCGGTCTGGCCCTCTAACCCGGCATGAAGTCTGACCGG
Tpdc-RTTGCCTTTTGAGCTGGCGTCTT
Ppa-FCGGGGTACCATGAAAGGAGGGAGCATTCTTCGACFor construction of the RNAi vector for silencing the ace1 gene
Ppa-RCCGTAGGTAGCGAGCCAATCGATTGTGCTGTAGCTGCGCTGCTTT
aces-FCAGCGCAGCTACAGCACAATCGATTGGCTCGCTACCTACGG
aces-RTACAGCCAAAGTCAAAACCCGTTGAAGATGTCGGGCTGTG
it-FCACAGCCCGACATCTTCAACGGGTTTTGACTTTGGCTGTA
it-RCTAGTCTAGAGTTCTTCAACGGAGGATAAA
acea-FCTAGTCTAGAGTTGAAGATGTCGGGCTGTG
acea-RCCGGTCAGACTTCATGCCGGGGATTGGCTCGCTACCTACGG
Tpa-FCCGTAGGTAGCGAGCCAATCCCCGGCATGAAGTCTGACCGG
Tpa-RACCCAAGCTTTTGCCTTTTGAGCTGGCGTCTT

aRestriction sites are underlined; overlapping regions in primers are double underlined

Primers used for construction of the xyr1 expression cassette and RNAi vector

PrimersSequences (5′–3′)aNotes
Ppdc-FATGAAAGGAGGGAGCATTCTTCGACFor construction of the xyr1 expression cassette
Ppdc-RAGCGACGGAGAGGATTGGACAACATGATTGTGCTGTAGCTGCGCTGCTTT
xyr-FAAAGCAGCGCAGCTACAGCACAATCATGTTGTCCAATCCTCTCCGTCGCT
xyr-RCTACCCGGTCAGACTTCATGCCGGGTTAGAGGGCCAGACCGGTTCCGTTA
Tpdc-FTAACGGAACCGGTCTGGCCCTCTAACCCGGCATGAAGTCTGACCGG
Tpdc-RTTGCCTTTTGAGCTGGCGTCTT
Ppa-FCGGGGTACCATGAAAGGAGGGAGCATTCTTCGACFor construction of the RNAi vector for silencing the ace1 gene
Ppa-RCCGTAGGTAGCGAGCCAATCGATTGTGCTGTAGCTGCGCTGCTTT
aces-FCAGCGCAGCTACAGCACAATCGATTGGCTCGCTACCTACGG
aces-RTACAGCCAAAGTCAAAACCCGTTGAAGATGTCGGGCTGTG
it-FCACAGCCCGACATCTTCAACGGGTTTTGACTTTGGCTGTA
it-RCTAGTCTAGAGTTCTTCAACGGAGGATAAA
acea-FCTAGTCTAGAGTTGAAGATGTCGGGCTGTG
acea-RCCGGTCAGACTTCATGCCGGGGATTGGCTCGCTACCTACGG
Tpa-FCCGTAGGTAGCGAGCCAATCCCCGGCATGAAGTCTGACCGG
Tpa-RACCCAAGCTTTTGCCTTTTGAGCTGGCGTCTT
PrimersSequences (5′–3′)aNotes
Ppdc-FATGAAAGGAGGGAGCATTCTTCGACFor construction of the xyr1 expression cassette
Ppdc-RAGCGACGGAGAGGATTGGACAACATGATTGTGCTGTAGCTGCGCTGCTTT
xyr-FAAAGCAGCGCAGCTACAGCACAATCATGTTGTCCAATCCTCTCCGTCGCT
xyr-RCTACCCGGTCAGACTTCATGCCGGGTTAGAGGGCCAGACCGGTTCCGTTA
Tpdc-FTAACGGAACCGGTCTGGCCCTCTAACCCGGCATGAAGTCTGACCGG
Tpdc-RTTGCCTTTTGAGCTGGCGTCTT
Ppa-FCGGGGTACCATGAAAGGAGGGAGCATTCTTCGACFor construction of the RNAi vector for silencing the ace1 gene
Ppa-RCCGTAGGTAGCGAGCCAATCGATTGTGCTGTAGCTGCGCTGCTTT
aces-FCAGCGCAGCTACAGCACAATCGATTGGCTCGCTACCTACGG
aces-RTACAGCCAAAGTCAAAACCCGTTGAAGATGTCGGGCTGTG
it-FCACAGCCCGACATCTTCAACGGGTTTTGACTTTGGCTGTA
it-RCTAGTCTAGAGTTCTTCAACGGAGGATAAA
acea-FCTAGTCTAGAGTTGAAGATGTCGGGCTGTG
acea-RCCGGTCAGACTTCATGCCGGGGATTGGCTCGCTACCTACGG
Tpa-FCCGTAGGTAGCGAGCCAATCCCCGGCATGAAGTCTGACCGG
Tpa-RACCCAAGCTTTTGCCTTTTGAGCTGGCGTCTT

aRestriction sites are underlined; overlapping regions in primers are double underlined

 
Schematic representation of the xyr1 expression cassette (a) and RNAi vector (b). Ppdc: Trichoderma reesei pdc promoter; ace1 (right arrow): 507-bp ace1 coding sequence; IT: 249-bp spacer fragment including intron 2 of the T. reesei eg2 gene; ace1 (left arrow): antisense strand of the 507-bp ace1 coding sequence; Tpdc: T. reesei pdc terminator. The line indicates the probe for Southern blot
Fig. 1

Schematic representation of the xyr1 expression cassette (a) and RNAi vector (b). Ppdc: Trichoderma reesei pdc promoter; ace1 (right arrow): 507-bp ace1 coding sequence; IT: 249-bp spacer fragment including intron 2 of the T. reesei eg2 gene; ace1 (left arrow): antisense strand of the 507-bp ace1 coding sequence; Tpdc: T. reesei pdc terminator. The line indicates the probe for Southern blot

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