Method . | Input . | Type . | Availability . |
---|---|---|---|
Rodeo | C | expression | R/Rodeo |
cs-lsfit | C | expression | R/CellMix |
cs-qprog | C | expression | R/CellMix |
LRCDE | C | expression | R/LRCDE |
csSAM | C | expression | R/csSAM |
Deblender | C | complete | Matlab |
CDSeq | #T | complete | Matlab, Octave, R |
LinSeed | #T | complete | R/linseed |
Deconf | #T | complete | R/CellMix |
Method . | Input . | Type . | Availability . |
---|---|---|---|
Rodeo | C | expression | R/Rodeo |
cs-lsfit | C | expression | R/CellMix |
cs-qprog | C | expression | R/CellMix |
LRCDE | C | expression | R/LRCDE |
csSAM | C | expression | R/csSAM |
Deblender | C | complete | Matlab |
CDSeq | #T | complete | Matlab, Octave, R |
LinSeed | #T | complete | R/linseed |
Deconf | #T | complete | R/CellMix |
Column ’Input’ describes required input data from the user and C refers to cell type proportion matrix and #T to number of cell types. Notably, Deblender is a complete method, but the partial deconvolution can be done separately and in the context of this study, it is used as expression deconvolution method.
Method . | Input . | Type . | Availability . |
---|---|---|---|
Rodeo | C | expression | R/Rodeo |
cs-lsfit | C | expression | R/CellMix |
cs-qprog | C | expression | R/CellMix |
LRCDE | C | expression | R/LRCDE |
csSAM | C | expression | R/csSAM |
Deblender | C | complete | Matlab |
CDSeq | #T | complete | Matlab, Octave, R |
LinSeed | #T | complete | R/linseed |
Deconf | #T | complete | R/CellMix |
Method . | Input . | Type . | Availability . |
---|---|---|---|
Rodeo | C | expression | R/Rodeo |
cs-lsfit | C | expression | R/CellMix |
cs-qprog | C | expression | R/CellMix |
LRCDE | C | expression | R/LRCDE |
csSAM | C | expression | R/csSAM |
Deblender | C | complete | Matlab |
CDSeq | #T | complete | Matlab, Octave, R |
LinSeed | #T | complete | R/linseed |
Deconf | #T | complete | R/CellMix |
Column ’Input’ describes required input data from the user and C refers to cell type proportion matrix and #T to number of cell types. Notably, Deblender is a complete method, but the partial deconvolution can be done separately and in the context of this study, it is used as expression deconvolution method.
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