Table 1.

The Entrez Databases (as of 9 September 2020)

DatabaseRecordsDescription
Literature
PubMed31 471 600scientific and medical abstracts/citations
PubMed Central6 447 271full-text journal articles
NLM catalog1 619 856index of NLM collections
Books825 385books and reports
MeSH300 500ontology used for PubMed indexing
Genomes
Nucleotide429 731 711DNA and RNA sequences
BioSample14 628 076descriptions of biological source materials
SRA11 807 161high-throughput DNA and RNA sequence read archive
Taxonomy2 401 136taxonomic classification and nomenclature catalog
Assembly837 406genome assembly information
BioProject458 893biological projects providing data to NCBI
Genome55 580genome sequencing projects by organism
BioCollections8 138museum, herbaria and other biorepository collections
Genes
GEO Profiles128 414 055gene expression and molecular abundance profiles
Gene28 377 759collected information about gene loci
GEO datasets4 002 373functional genomics studies
PopSet350 627sequence sets from phylogenetic and population studies
HomoloGene141 268homologous gene sets for selected organisms
Genetics
SNP720 643 623short genetic variations
dbVar6 030 887genome structural variation studies
ClinVar845 008human variations of clinical significance
MedGen335 277medical genetics literature and links
GTR76 814genetic testing registry
dbGaP1 397genotype/phenotype interaction studies
Proteins
Protein874 272 642protein sequences
Identical protein groups329 946 078protein sequences grouped by identity
Protein clusters1 137 329sequence similarity-based protein clusters
Structure167 650experimentally-determined biomolecular structures
Sparcle149 462conserved domain architectures
Conserved domains59 951conserved protein domains
Chemicals
PubChem substance285 048 146deposited substance and chemical information
PubChem compound111 325 418chemical information with structures, information and links
PubChem BioAssay1 229 071bioactivity screening studies
BioSystems983 968molecular pathways with links to genes, proteins and chemicals
DatabaseRecordsDescription
Literature
PubMed31 471 600scientific and medical abstracts/citations
PubMed Central6 447 271full-text journal articles
NLM catalog1 619 856index of NLM collections
Books825 385books and reports
MeSH300 500ontology used for PubMed indexing
Genomes
Nucleotide429 731 711DNA and RNA sequences
BioSample14 628 076descriptions of biological source materials
SRA11 807 161high-throughput DNA and RNA sequence read archive
Taxonomy2 401 136taxonomic classification and nomenclature catalog
Assembly837 406genome assembly information
BioProject458 893biological projects providing data to NCBI
Genome55 580genome sequencing projects by organism
BioCollections8 138museum, herbaria and other biorepository collections
Genes
GEO Profiles128 414 055gene expression and molecular abundance profiles
Gene28 377 759collected information about gene loci
GEO datasets4 002 373functional genomics studies
PopSet350 627sequence sets from phylogenetic and population studies
HomoloGene141 268homologous gene sets for selected organisms
Genetics
SNP720 643 623short genetic variations
dbVar6 030 887genome structural variation studies
ClinVar845 008human variations of clinical significance
MedGen335 277medical genetics literature and links
GTR76 814genetic testing registry
dbGaP1 397genotype/phenotype interaction studies
Proteins
Protein874 272 642protein sequences
Identical protein groups329 946 078protein sequences grouped by identity
Protein clusters1 137 329sequence similarity-based protein clusters
Structure167 650experimentally-determined biomolecular structures
Sparcle149 462conserved domain architectures
Conserved domains59 951conserved protein domains
Chemicals
PubChem substance285 048 146deposited substance and chemical information
PubChem compound111 325 418chemical information with structures, information and links
PubChem BioAssay1 229 071bioactivity screening studies
BioSystems983 968molecular pathways with links to genes, proteins and chemicals
Table 1.

The Entrez Databases (as of 9 September 2020)

DatabaseRecordsDescription
Literature
PubMed31 471 600scientific and medical abstracts/citations
PubMed Central6 447 271full-text journal articles
NLM catalog1 619 856index of NLM collections
Books825 385books and reports
MeSH300 500ontology used for PubMed indexing
Genomes
Nucleotide429 731 711DNA and RNA sequences
BioSample14 628 076descriptions of biological source materials
SRA11 807 161high-throughput DNA and RNA sequence read archive
Taxonomy2 401 136taxonomic classification and nomenclature catalog
Assembly837 406genome assembly information
BioProject458 893biological projects providing data to NCBI
Genome55 580genome sequencing projects by organism
BioCollections8 138museum, herbaria and other biorepository collections
Genes
GEO Profiles128 414 055gene expression and molecular abundance profiles
Gene28 377 759collected information about gene loci
GEO datasets4 002 373functional genomics studies
PopSet350 627sequence sets from phylogenetic and population studies
HomoloGene141 268homologous gene sets for selected organisms
Genetics
SNP720 643 623short genetic variations
dbVar6 030 887genome structural variation studies
ClinVar845 008human variations of clinical significance
MedGen335 277medical genetics literature and links
GTR76 814genetic testing registry
dbGaP1 397genotype/phenotype interaction studies
Proteins
Protein874 272 642protein sequences
Identical protein groups329 946 078protein sequences grouped by identity
Protein clusters1 137 329sequence similarity-based protein clusters
Structure167 650experimentally-determined biomolecular structures
Sparcle149 462conserved domain architectures
Conserved domains59 951conserved protein domains
Chemicals
PubChem substance285 048 146deposited substance and chemical information
PubChem compound111 325 418chemical information with structures, information and links
PubChem BioAssay1 229 071bioactivity screening studies
BioSystems983 968molecular pathways with links to genes, proteins and chemicals
DatabaseRecordsDescription
Literature
PubMed31 471 600scientific and medical abstracts/citations
PubMed Central6 447 271full-text journal articles
NLM catalog1 619 856index of NLM collections
Books825 385books and reports
MeSH300 500ontology used for PubMed indexing
Genomes
Nucleotide429 731 711DNA and RNA sequences
BioSample14 628 076descriptions of biological source materials
SRA11 807 161high-throughput DNA and RNA sequence read archive
Taxonomy2 401 136taxonomic classification and nomenclature catalog
Assembly837 406genome assembly information
BioProject458 893biological projects providing data to NCBI
Genome55 580genome sequencing projects by organism
BioCollections8 138museum, herbaria and other biorepository collections
Genes
GEO Profiles128 414 055gene expression and molecular abundance profiles
Gene28 377 759collected information about gene loci
GEO datasets4 002 373functional genomics studies
PopSet350 627sequence sets from phylogenetic and population studies
HomoloGene141 268homologous gene sets for selected organisms
Genetics
SNP720 643 623short genetic variations
dbVar6 030 887genome structural variation studies
ClinVar845 008human variations of clinical significance
MedGen335 277medical genetics literature and links
GTR76 814genetic testing registry
dbGaP1 397genotype/phenotype interaction studies
Proteins
Protein874 272 642protein sequences
Identical protein groups329 946 078protein sequences grouped by identity
Protein clusters1 137 329sequence similarity-based protein clusters
Structure167 650experimentally-determined biomolecular structures
Sparcle149 462conserved domain architectures
Conserved domains59 951conserved protein domains
Chemicals
PubChem substance285 048 146deposited substance and chemical information
PubChem compound111 325 418chemical information with structures, information and links
PubChem BioAssay1 229 071bioactivity screening studies
BioSystems983 968molecular pathways with links to genes, proteins and chemicals
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