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Table 1

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Performance of TCP, PageRank and HITS performed on five different protein similarity networks on LE benchmark dataset via 2-fold cross-validation

Methods	Accuracy
PageRank (LTR)^a	72.5%
HITS (LTR)^a	70.1%
TCP (LTR) ^a	73.2%
PageRank (DF)^b	71.3%
HITS (DF)^b	69.4%
TCP (DF)^b	72.6%
PageRank (CS)^c	4.9%
HITS (CS)^c	10.1%
TCP (CS)^c	20.9%
PageRank (CL)^d	9.3%
HITS (CL)^d	12.5%
TCP (CL)^d	19.3%
PageRank (GK)^e	6.5%
HITS (GK)^e	10.3%
TCP (GK)^e	11.2%

Methods	Accuracy
PageRank (LTR)^a	72.5%
HITS (LTR)^a	70.1%
TCP (LTR) ^a	73.2%
PageRank (DF)^b	71.3%
HITS (DF)^b	69.4%
TCP (DF)^b	72.6%
PageRank (CS)^c	4.9%
HITS (CS)^c	10.1%
TCP (CS)^c	20.9%
PageRank (CL)^d	9.3%
HITS (CL)^d	12.5%
TCP (CL)^d	19.3%
PageRank (GK)^e	6.5%
HITS (GK)^e	10.3%
TCP (GK)^e	11.2%

^athe network based on LTR calculated by LTR;

^bthe network based on DF calculated by DeepFRpro [34];

^cthe network based on CS calculated by cosine function [18];

^dthe networks based on CL calculated by correlation function [18];

^ethe networks based on GK calculated by Gaussian kernel function [18].

Table 1

Open in new tab

Performance of TCP, PageRank and HITS performed on five different protein similarity networks on LE benchmark dataset via 2-fold cross-validation

Methods	Accuracy
PageRank (LTR)^a	72.5%
HITS (LTR)^a	70.1%
TCP (LTR) ^a	73.2%
PageRank (DF)^b	71.3%
HITS (DF)^b	69.4%
TCP (DF)^b	72.6%
PageRank (CS)^c	4.9%
HITS (CS)^c	10.1%
TCP (CS)^c	20.9%
PageRank (CL)^d	9.3%
HITS (CL)^d	12.5%
TCP (CL)^d	19.3%
PageRank (GK)^e	6.5%
HITS (GK)^e	10.3%
TCP (GK)^e	11.2%

Methods	Accuracy
PageRank (LTR)^a	72.5%
HITS (LTR)^a	70.1%
TCP (LTR) ^a	73.2%
PageRank (DF)^b	71.3%
HITS (DF)^b	69.4%
TCP (DF)^b	72.6%
PageRank (CS)^c	4.9%
HITS (CS)^c	10.1%
TCP (CS)^c	20.9%
PageRank (CL)^d	9.3%
HITS (CL)^d	12.5%
TCP (CL)^d	19.3%
PageRank (GK)^e	6.5%
HITS (GK)^e	10.3%
TCP (GK)^e	11.2%

^athe network based on LTR calculated by LTR;

^bthe network based on DF calculated by DeepFRpro [34];

^cthe network based on CS calculated by cosine function [18];

^dthe networks based on CL calculated by correlation function [18];

^ethe networks based on GK calculated by Gaussian kernel function [18].