Table 1.
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Methylated sequence motifs detected for H. pylori 26695

Type of R-M systemMethyltransferase activityaType of methylationTotal number in genomebNumber methylated% detected methylatedAssignmentLocusReference
I5′-ACAN8TAG-3′*m6A33032698.8M.HpyAXIIIchp0850This study
3′-TGTN8ATC-5′*33032698.8
II5′-CCTC-3′m5C4885391380.1M2.HpyAVIhp0051(23)/(24)
3′-GGAG-5′m6A4885484199.1M1.HpyAVIhp0050(23)
5′-CCTTC-3′m5C1304119891.9M.HpyAVhp0054This study/(23)
3′-GGAAG-5′m6A1304125296.0
5′-GATC-3′m6A10 83410 76499.4M.HpyAIIIhp0092(23)
5′-TCGA-3′m6A60860198.8M.HpyAXhp0260(24)
5′-ATTAAT-3′m6A97295798.5M.HpyAVIIhp0478(23)
5′-GCGC-3′m5C12 538632850.5M.HpyAVIIIhp1121(23,24)
5′-CATG-3′m6A14 78214 74199.7M.HpyAIhp1208(23)
5′-GANTC-3′m6A5570554999.6M.HpyAIVhp1352(23)
5′-GAAGA-3′m6A4823480999.7M1.HpyAIIhp1367(23)
3′-CTTCT-5′m4C4823459395.2M2.HpyAIIhp1368
5′-GCGTA-3′*m6A2058204699.4HpyAXIVhp1517This study
III5′-GCAG-3′m6A4260423499.4M.HpyAXIhp0593(25)
IIG or III5′-CGRAT-3′*m6A3275324098.9-n.d.This study
Type of R-M systemMethyltransferase activityaType of methylationTotal number in genomebNumber methylated% detected methylatedAssignmentLocusReference
I5′-ACAN8TAG-3′*m6A33032698.8M.HpyAXIIIchp0850This study
3′-TGTN8ATC-5′*33032698.8
II5′-CCTC-3′m5C4885391380.1M2.HpyAVIhp0051(23)/(24)
3′-GGAG-5′m6A4885484199.1M1.HpyAVIhp0050(23)
5′-CCTTC-3′m5C1304119891.9M.HpyAVhp0054This study/(23)
3′-GGAAG-5′m6A1304125296.0
5′-GATC-3′m6A10 83410 76499.4M.HpyAIIIhp0092(23)
5′-TCGA-3′m6A60860198.8M.HpyAXhp0260(24)
5′-ATTAAT-3′m6A97295798.5M.HpyAVIIhp0478(23)
5′-GCGC-3′m5C12 538632850.5M.HpyAVIIIhp1121(23,24)
5′-CATG-3′m6A14 78214 74199.7M.HpyAIhp1208(23)
5′-GANTC-3′m6A5570554999.6M.HpyAIVhp1352(23)
5′-GAAGA-3′m6A4823480999.7M1.HpyAIIhp1367(23)
3′-CTTCT-5′m4C4823459395.2M2.HpyAIIhp1368
5′-GCGTA-3′*m6A2058204699.4HpyAXIVhp1517This study
III5′-GCAG-3′m6A4260423499.4M.HpyAXIhp0593(25)
IIG or III5′-CGRAT-3′*m6A3275324098.9-n.d.This study

aThe methylated position within the motif is highlighted in bold. Underlining indicates the modified base in the complementary strand. Pairs of reverse-complementary motifs belonging to one recognition sequence are grouped together. Novel recognition sequences are highlighted by an asterisk.

bThe total number includes motifs occurring on the ‘+’- and ‘−’-strand.

cThe MTase M.HpyAXIII achieves specificity from distantly located S subunit S.HpyAXIII (HP0790).

Table 1.
Open in new tab

Methylated sequence motifs detected for H. pylori 26695

Type of R-M systemMethyltransferase activityaType of methylationTotal number in genomebNumber methylated% detected methylatedAssignmentLocusReference
I5′-ACAN8TAG-3′*m6A33032698.8M.HpyAXIIIchp0850This study
3′-TGTN8ATC-5′*33032698.8
II5′-CCTC-3′m5C4885391380.1M2.HpyAVIhp0051(23)/(24)
3′-GGAG-5′m6A4885484199.1M1.HpyAVIhp0050(23)
5′-CCTTC-3′m5C1304119891.9M.HpyAVhp0054This study/(23)
3′-GGAAG-5′m6A1304125296.0
5′-GATC-3′m6A10 83410 76499.4M.HpyAIIIhp0092(23)
5′-TCGA-3′m6A60860198.8M.HpyAXhp0260(24)
5′-ATTAAT-3′m6A97295798.5M.HpyAVIIhp0478(23)
5′-GCGC-3′m5C12 538632850.5M.HpyAVIIIhp1121(23,24)
5′-CATG-3′m6A14 78214 74199.7M.HpyAIhp1208(23)
5′-GANTC-3′m6A5570554999.6M.HpyAIVhp1352(23)
5′-GAAGA-3′m6A4823480999.7M1.HpyAIIhp1367(23)
3′-CTTCT-5′m4C4823459395.2M2.HpyAIIhp1368
5′-GCGTA-3′*m6A2058204699.4HpyAXIVhp1517This study
III5′-GCAG-3′m6A4260423499.4M.HpyAXIhp0593(25)
IIG or III5′-CGRAT-3′*m6A3275324098.9-n.d.This study
Type of R-M systemMethyltransferase activityaType of methylationTotal number in genomebNumber methylated% detected methylatedAssignmentLocusReference
I5′-ACAN8TAG-3′*m6A33032698.8M.HpyAXIIIchp0850This study
3′-TGTN8ATC-5′*33032698.8
II5′-CCTC-3′m5C4885391380.1M2.HpyAVIhp0051(23)/(24)
3′-GGAG-5′m6A4885484199.1M1.HpyAVIhp0050(23)
5′-CCTTC-3′m5C1304119891.9M.HpyAVhp0054This study/(23)
3′-GGAAG-5′m6A1304125296.0
5′-GATC-3′m6A10 83410 76499.4M.HpyAIIIhp0092(23)
5′-TCGA-3′m6A60860198.8M.HpyAXhp0260(24)
5′-ATTAAT-3′m6A97295798.5M.HpyAVIIhp0478(23)
5′-GCGC-3′m5C12 538632850.5M.HpyAVIIIhp1121(23,24)
5′-CATG-3′m6A14 78214 74199.7M.HpyAIhp1208(23)
5′-GANTC-3′m6A5570554999.6M.HpyAIVhp1352(23)
5′-GAAGA-3′m6A4823480999.7M1.HpyAIIhp1367(23)
3′-CTTCT-5′m4C4823459395.2M2.HpyAIIhp1368
5′-GCGTA-3′*m6A2058204699.4HpyAXIVhp1517This study
III5′-GCAG-3′m6A4260423499.4M.HpyAXIhp0593(25)
IIG or III5′-CGRAT-3′*m6A3275324098.9-n.d.This study

aThe methylated position within the motif is highlighted in bold. Underlining indicates the modified base in the complementary strand. Pairs of reverse-complementary motifs belonging to one recognition sequence are grouped together. Novel recognition sequences are highlighted by an asterisk.

bThe total number includes motifs occurring on the ‘+’- and ‘−’-strand.

cThe MTase M.HpyAXIII achieves specificity from distantly located S subunit S.HpyAXIII (HP0790).

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