Transcript structure . | Mean number of Us (minimum–maximum) . | Major peak RNA-Seq (nt)b . | |
---|---|---|---|
circRT-PCR (nt) . | RNA-Seq (nt) . | ||
∼m1.[U]n | 5 (3–7)c | n.d.d | n.d.d |
∼m1.[U]n.m2∼ | 26.6 (26–28)e | 25.1 (14–33)f | 26f |
[U]n.m2∼ | / | n.d.d | n.d.d |
Transcript structure . | Mean number of Us (minimum–maximum) . | Major peak RNA-Seq (nt)b . | |
---|---|---|---|
circRT-PCR (nt) . | RNA-Seq (nt) . | ||
∼m1.[U]n | 5 (3–7)c | n.d.d | n.d.d |
∼m1.[U]n.m2∼ | 26.6 (26–28)e | 25.1 (14–33)f | 26f |
[U]n.m2∼ | / | n.d.d | n.d.d |
am1, m2, rnl modules 1 and 2; [U]n, uridine-homopolymer of length n; m1.[U]n, module 1 with 3′-terminal U tract; m1.[U]n.m2, LSU-rRNA; [U]n.m2, module 2 with 5'-terminal U tract; and ∼, exact module terminus not determined. n.d., not identified; /, not observed.
bPeak positions of tract length distribution is taken from Supplementary Figure S2. Libraries F2, PA and GG display similar U-tract length as F1 shown here.
cFour clones (dp11056, dp11060, dp11084, dp11088).
dThis type of transcript could not be identified unambiguously.
eSeven clones (dp9540, dp10594, dp11008, dp11009, dp11012, dp11017, dp11064).
fNot-quality clipped individual reads from the F1 library.
Transcript structure . | Mean number of Us (minimum–maximum) . | Major peak RNA-Seq (nt)b . | |
---|---|---|---|
circRT-PCR (nt) . | RNA-Seq (nt) . | ||
∼m1.[U]n | 5 (3–7)c | n.d.d | n.d.d |
∼m1.[U]n.m2∼ | 26.6 (26–28)e | 25.1 (14–33)f | 26f |
[U]n.m2∼ | / | n.d.d | n.d.d |
Transcript structure . | Mean number of Us (minimum–maximum) . | Major peak RNA-Seq (nt)b . | |
---|---|---|---|
circRT-PCR (nt) . | RNA-Seq (nt) . | ||
∼m1.[U]n | 5 (3–7)c | n.d.d | n.d.d |
∼m1.[U]n.m2∼ | 26.6 (26–28)e | 25.1 (14–33)f | 26f |
[U]n.m2∼ | / | n.d.d | n.d.d |
am1, m2, rnl modules 1 and 2; [U]n, uridine-homopolymer of length n; m1.[U]n, module 1 with 3′-terminal U tract; m1.[U]n.m2, LSU-rRNA; [U]n.m2, module 2 with 5'-terminal U tract; and ∼, exact module terminus not determined. n.d., not identified; /, not observed.
bPeak positions of tract length distribution is taken from Supplementary Figure S2. Libraries F2, PA and GG display similar U-tract length as F1 shown here.
cFour clones (dp11056, dp11060, dp11084, dp11088).
dThis type of transcript could not be identified unambiguously.
eSeven clones (dp9540, dp10594, dp11008, dp11009, dp11012, dp11017, dp11064).
fNot-quality clipped individual reads from the F1 library.
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