Proportions of Simulated Replicates in Which the MAP Tree Includes the True Subtrees R, S, T, and U in Species Trees B and U of Figure 4.
| Data . | 2 . | 8 . | 2 . | 8 . |
|---|---|---|---|---|
| Tree B | ||||
| L = 40, N = 250 | 0.11, 0.43, 0.57, 0.47 | 0.03, 0.34, 0.42, 0.43 | 0.40, 0.61, 0.71, 0.71 | 0.46, 0.61, 0.65, 0.74 |
| L = 40, N = 1,000 | 0.55, 0.74, 0.80, 0.76 | 0.60, 0.75, 0.80, 0.84 | 0.77, 0.82, 0.82, 0.93 | 0.77, 0.83, 0.83, 0.91 |
| L = 160, N = 250 | 0.65, 0.85, 0.90, 0.76 | 0.60, 0.74, 0.80, 0.81 | 0.86, 0.91, 0.91, 0.94 | 0.96, 0.97, 0.97, 0.99 |
| L = 160, N = 1,000 | 0.99, 0.99, 0.99, 1.00 | 0.97, 0.97, 0.97, 1.00 | 0.96, 0.96, 0.96, 1.00 | 0.99, 0.99, 0.99, 1.00 |
| Tree U | ||||
| L = 40, N = 250 | 0.52, 0.52, 0.68, 0.79 | 0.50, 0.50, 0.66, 0.80 | 0.82, 0.82, 0.92, 0.95 | 0.77, 0.77, 0.87, 0.89 |
| L = 40, N = 1,000 | 0.92, 0.92, 0.96, 0.96 | 0.85, 0.85, 0.97, 0.97 | 0.98, 0.98, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
| L = 160, N = 250 | 0.89, 0.89, 1.00, 1.00 | 0.91, 0.91, 0.99, 1.00 | 0.99, 0.99, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
| L = 160, N = 1,000 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
| Data . | 2 . | 8 . | 2 . | 8 . |
|---|---|---|---|---|
| Tree B | ||||
| L = 40, N = 250 | 0.11, 0.43, 0.57, 0.47 | 0.03, 0.34, 0.42, 0.43 | 0.40, 0.61, 0.71, 0.71 | 0.46, 0.61, 0.65, 0.74 |
| L = 40, N = 1,000 | 0.55, 0.74, 0.80, 0.76 | 0.60, 0.75, 0.80, 0.84 | 0.77, 0.82, 0.82, 0.93 | 0.77, 0.83, 0.83, 0.91 |
| L = 160, N = 250 | 0.65, 0.85, 0.90, 0.76 | 0.60, 0.74, 0.80, 0.81 | 0.86, 0.91, 0.91, 0.94 | 0.96, 0.97, 0.97, 0.99 |
| L = 160, N = 1,000 | 0.99, 0.99, 0.99, 1.00 | 0.97, 0.97, 0.97, 1.00 | 0.96, 0.96, 0.96, 1.00 | 0.99, 0.99, 0.99, 1.00 |
| Tree U | ||||
| L = 40, N = 250 | 0.52, 0.52, 0.68, 0.79 | 0.50, 0.50, 0.66, 0.80 | 0.82, 0.82, 0.92, 0.95 | 0.77, 0.77, 0.87, 0.89 |
| L = 40, N = 1,000 | 0.92, 0.92, 0.96, 0.96 | 0.85, 0.85, 0.97, 0.97 | 0.98, 0.98, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
| L = 160, N = 250 | 0.89, 0.89, 1.00, 1.00 | 0.91, 0.91, 0.99, 1.00 | 0.99, 0.99, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
| L = 160, N = 1,000 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
Proportions of Simulated Replicates in Which the MAP Tree Includes the True Subtrees R, S, T, and U in Species Trees B and U of Figure 4.
| Data . | 2 . | 8 . | 2 . | 8 . |
|---|---|---|---|---|
| Tree B | ||||
| L = 40, N = 250 | 0.11, 0.43, 0.57, 0.47 | 0.03, 0.34, 0.42, 0.43 | 0.40, 0.61, 0.71, 0.71 | 0.46, 0.61, 0.65, 0.74 |
| L = 40, N = 1,000 | 0.55, 0.74, 0.80, 0.76 | 0.60, 0.75, 0.80, 0.84 | 0.77, 0.82, 0.82, 0.93 | 0.77, 0.83, 0.83, 0.91 |
| L = 160, N = 250 | 0.65, 0.85, 0.90, 0.76 | 0.60, 0.74, 0.80, 0.81 | 0.86, 0.91, 0.91, 0.94 | 0.96, 0.97, 0.97, 0.99 |
| L = 160, N = 1,000 | 0.99, 0.99, 0.99, 1.00 | 0.97, 0.97, 0.97, 1.00 | 0.96, 0.96, 0.96, 1.00 | 0.99, 0.99, 0.99, 1.00 |
| Tree U | ||||
| L = 40, N = 250 | 0.52, 0.52, 0.68, 0.79 | 0.50, 0.50, 0.66, 0.80 | 0.82, 0.82, 0.92, 0.95 | 0.77, 0.77, 0.87, 0.89 |
| L = 40, N = 1,000 | 0.92, 0.92, 0.96, 0.96 | 0.85, 0.85, 0.97, 0.97 | 0.98, 0.98, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
| L = 160, N = 250 | 0.89, 0.89, 1.00, 1.00 | 0.91, 0.91, 0.99, 1.00 | 0.99, 0.99, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
| L = 160, N = 1,000 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
| Data . | 2 . | 8 . | 2 . | 8 . |
|---|---|---|---|---|
| Tree B | ||||
| L = 40, N = 250 | 0.11, 0.43, 0.57, 0.47 | 0.03, 0.34, 0.42, 0.43 | 0.40, 0.61, 0.71, 0.71 | 0.46, 0.61, 0.65, 0.74 |
| L = 40, N = 1,000 | 0.55, 0.74, 0.80, 0.76 | 0.60, 0.75, 0.80, 0.84 | 0.77, 0.82, 0.82, 0.93 | 0.77, 0.83, 0.83, 0.91 |
| L = 160, N = 250 | 0.65, 0.85, 0.90, 0.76 | 0.60, 0.74, 0.80, 0.81 | 0.86, 0.91, 0.91, 0.94 | 0.96, 0.97, 0.97, 0.99 |
| L = 160, N = 1,000 | 0.99, 0.99, 0.99, 1.00 | 0.97, 0.97, 0.97, 1.00 | 0.96, 0.96, 0.96, 1.00 | 0.99, 0.99, 0.99, 1.00 |
| Tree U | ||||
| L = 40, N = 250 | 0.52, 0.52, 0.68, 0.79 | 0.50, 0.50, 0.66, 0.80 | 0.82, 0.82, 0.92, 0.95 | 0.77, 0.77, 0.87, 0.89 |
| L = 40, N = 1,000 | 0.92, 0.92, 0.96, 0.96 | 0.85, 0.85, 0.97, 0.97 | 0.98, 0.98, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
| L = 160, N = 250 | 0.89, 0.89, 1.00, 1.00 | 0.91, 0.91, 0.99, 1.00 | 0.99, 0.99, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
| L = 160, N = 1,000 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 | 1.00, 1.00, 1.00, 1.00 |
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