Table 3 Open in new tab Summary of...

Table 3

Summary of results along the pipeline steps for the selected pathologies. The features from left to right are selected disease, main location in the body, number of data sets, number of selected data sets and number of upregulated differential expressed genes (DEG up) and downregulated differential expressed genes (DEG down)

Disease	Organ/tissue	Data set	Selected data set	DEG up	DEG down
CD	Small intestine	427	7	56^*	43^*
Alopecia areata	Skin (scalp)	7	2	21	32
Arteritis	Arteries	24	1	2	4
Autoimmune thyroid disease	Thyroid	7	1	38	40
Dermatomyositis	Skin, muscle	22	3	63	6
Primary biliary cirrhosis	Liver	38	1	1	2
Peripheral neuropathy	Nerves	75	2	18	4
Rheumatoid arthritis	Joints	159	2	21	18
Vitiligo	Skin	9	2	54	17

Disease	Organ/tissue	Data set	Selected data set	DEG up	DEG down
CD	Small intestine	427	7	56^*	43^*
Alopecia areata	Skin (scalp)	7	2	21	32
Arteritis	Arteries	24	1	2	4
Autoimmune thyroid disease	Thyroid	7	1	38	40
Dermatomyositis	Skin, muscle	22	3	63	6
Primary biliary cirrhosis	Liver	38	1	1	2
Peripheral neuropathy	Nerves	75	2	18	4
Rheumatoid arthritis	Joints	159	2	21	18
Vitiligo	Skin	9	2	54	17

^*Numbers referred to differential expressed genes with strong evidences in CD.

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