The approximate and accurate threshold values of –log10(p) for eight Arabidopsis traits and four mouse traits
| Traits . | n . | Statistic . | BD . | BH . | QA . | Permutation . | Confidence interval . | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| . | . | . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . |
| Ara-1 | 89 | t | 7.335 | 6.636 | 7.335 | 6.636 | 7.256 | 6.567 | 7.213 | 6.346 | (7.046, 7.392) | (6.192, 6.764) |
| Ara-2 | 93 | 7.335 | 6.636 | 7.335 | 6.636 | 7.263 | 6.536 | 7.424 | 6.544 | (7.133, 7.614) | (6.304, 6.886) | |
| Ara-3 | 93 | 7.335 | 6.636 | 7.335 | 6.636 | 7.256 | 6.529 | 6.879 | 6.347 | (6.712, 7.359) | (6.133, 6.533) | |
| Ara-4 | 100 | 7.335 | 6.636 | 7.335 | 6.636 | 7.259 | 6.475 | 7.161 | 6.437 | (6.903, 7.299) | (6.251, 6.750) | |
| Ara-5 | 110 | 7.335 | 6.636 | 7.335 | 6.636 | 7.262 | 6.536 | 7.339 | 6.670 | (7.188, 7.938) | (6.483, 6.939) | |
| Ara-6 | 164 | 7.335 | 6.636 | 6.733 | 5.681 | 7.248 | 6.523 | 7.547 | 6.605 | (7.462, 8.125) | (6.471, 7.100) | |
| Ara-7 | 166 | 7.335 | 6.636 | 7.335 | 5.045 | 7.246 | 6.522 | 7.585 | 6.894 | (7.429, 7.813) | (6.681, 7.204) | |
| Ara-8 | 180 | 7.335 | 6.636 | 5.954 | 5.023 | 7.259 | 6.535 | 8.053 | 7.075 | (7.868, 8.225) | (6.736, 7.691) | |
| Mice-1 | 1405 | U | 6.040 | 5.341 | 4.378 | 3.579 | 5.670 | 4.940 | 5.580 | 4.863 | (5.485, 5.705) | (4.647, 5.184) |
| |${\chi}^2$| | 5.983 | 5.255 | 5.580 | 4.863 | (5.485, 5.705) | (4.647, 5.184) | ||||||
| Mice-2 | 1571 | U | 6.040 | 5.341 | 4.999 | 3.910 | 5.684 | 4.954 | 5.486 | 4.873 | (5.373, 5.828) | (4.662, 5.151) |
| |${\chi}^2$| | 5.997 | 5.269 | 5.486 | 4.873 | (5.373, 5.828) | (4.662, 5.151) | ||||||
| Mice-3 | 1642 | U | 6.041 | 5.342 | 4.962 | 4.228 | 5.675 | 4.945 | 5.509 | 4.902 | (5.375, 5.896) | (4.676, 5.189) |
| |${\chi}^2$| | 5.988 | 5.260 | 5.509 | 4.902 | (5.375, 5.896) | (4.676, 5.189) | ||||||
| Mice-4 | 1643 | U | 6.041 | 5.342 | 5.041 | 4.112 | 5.669 | 4.939 | 5.523 | 4.803 | (5.353, 5.918) | (4.622, 5.048) |
| |${\chi}^2$| | 5.982 | 5.254 | 5.523 | 4.803 | (5.353, 5.918) | (4.622, 5.048) | ||||||
| Traits . | n . | Statistic . | BD . | BH . | QA . | Permutation . | Confidence interval . | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| . | . | . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . |
| Ara-1 | 89 | t | 7.335 | 6.636 | 7.335 | 6.636 | 7.256 | 6.567 | 7.213 | 6.346 | (7.046, 7.392) | (6.192, 6.764) |
| Ara-2 | 93 | 7.335 | 6.636 | 7.335 | 6.636 | 7.263 | 6.536 | 7.424 | 6.544 | (7.133, 7.614) | (6.304, 6.886) | |
| Ara-3 | 93 | 7.335 | 6.636 | 7.335 | 6.636 | 7.256 | 6.529 | 6.879 | 6.347 | (6.712, 7.359) | (6.133, 6.533) | |
| Ara-4 | 100 | 7.335 | 6.636 | 7.335 | 6.636 | 7.259 | 6.475 | 7.161 | 6.437 | (6.903, 7.299) | (6.251, 6.750) | |
| Ara-5 | 110 | 7.335 | 6.636 | 7.335 | 6.636 | 7.262 | 6.536 | 7.339 | 6.670 | (7.188, 7.938) | (6.483, 6.939) | |
| Ara-6 | 164 | 7.335 | 6.636 | 6.733 | 5.681 | 7.248 | 6.523 | 7.547 | 6.605 | (7.462, 8.125) | (6.471, 7.100) | |
| Ara-7 | 166 | 7.335 | 6.636 | 7.335 | 5.045 | 7.246 | 6.522 | 7.585 | 6.894 | (7.429, 7.813) | (6.681, 7.204) | |
| Ara-8 | 180 | 7.335 | 6.636 | 5.954 | 5.023 | 7.259 | 6.535 | 8.053 | 7.075 | (7.868, 8.225) | (6.736, 7.691) | |
| Mice-1 | 1405 | U | 6.040 | 5.341 | 4.378 | 3.579 | 5.670 | 4.940 | 5.580 | 4.863 | (5.485, 5.705) | (4.647, 5.184) |
| |${\chi}^2$| | 5.983 | 5.255 | 5.580 | 4.863 | (5.485, 5.705) | (4.647, 5.184) | ||||||
| Mice-2 | 1571 | U | 6.040 | 5.341 | 4.999 | 3.910 | 5.684 | 4.954 | 5.486 | 4.873 | (5.373, 5.828) | (4.662, 5.151) |
| |${\chi}^2$| | 5.997 | 5.269 | 5.486 | 4.873 | (5.373, 5.828) | (4.662, 5.151) | ||||||
| Mice-3 | 1642 | U | 6.041 | 5.342 | 4.962 | 4.228 | 5.675 | 4.945 | 5.509 | 4.902 | (5.375, 5.896) | (4.676, 5.189) |
| |${\chi}^2$| | 5.988 | 5.260 | 5.509 | 4.902 | (5.375, 5.896) | (4.676, 5.189) | ||||||
| Mice-4 | 1643 | U | 6.041 | 5.342 | 5.041 | 4.112 | 5.669 | 4.939 | 5.523 | 4.803 | (5.353, 5.918) | (4.622, 5.048) |
| |${\chi}^2$| | 5.982 | 5.254 | 5.523 | 4.803 | (5.353, 5.918) | (4.622, 5.048) | ||||||
n is population size; BD represents Bonferroni step-down adjustment, BH controlling FDR and QA quick approximation methods. Ara-1–8 represent the trait X182_Hypocotyl.length, X278_Germ.in.dark, X29_Se82, X272_Seedling.Growth, X283_Storage.56.days, X44_FRI, X59_FT.GH, X57_FT.Field, respectively, in Arabidopsis. Mice-1–4 refer to the trait Imm.PctCD8, Haem.MCH, FPS.Pre.Bang.ToneMean, FPS.Pre.Bang.Mean, respectively, in mouse.
The approximate and accurate threshold values of –log10(p) for eight Arabidopsis traits and four mouse traits
| Traits . | n . | Statistic . | BD . | BH . | QA . | Permutation . | Confidence interval . | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| . | . | . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . |
| Ara-1 | 89 | t | 7.335 | 6.636 | 7.335 | 6.636 | 7.256 | 6.567 | 7.213 | 6.346 | (7.046, 7.392) | (6.192, 6.764) |
| Ara-2 | 93 | 7.335 | 6.636 | 7.335 | 6.636 | 7.263 | 6.536 | 7.424 | 6.544 | (7.133, 7.614) | (6.304, 6.886) | |
| Ara-3 | 93 | 7.335 | 6.636 | 7.335 | 6.636 | 7.256 | 6.529 | 6.879 | 6.347 | (6.712, 7.359) | (6.133, 6.533) | |
| Ara-4 | 100 | 7.335 | 6.636 | 7.335 | 6.636 | 7.259 | 6.475 | 7.161 | 6.437 | (6.903, 7.299) | (6.251, 6.750) | |
| Ara-5 | 110 | 7.335 | 6.636 | 7.335 | 6.636 | 7.262 | 6.536 | 7.339 | 6.670 | (7.188, 7.938) | (6.483, 6.939) | |
| Ara-6 | 164 | 7.335 | 6.636 | 6.733 | 5.681 | 7.248 | 6.523 | 7.547 | 6.605 | (7.462, 8.125) | (6.471, 7.100) | |
| Ara-7 | 166 | 7.335 | 6.636 | 7.335 | 5.045 | 7.246 | 6.522 | 7.585 | 6.894 | (7.429, 7.813) | (6.681, 7.204) | |
| Ara-8 | 180 | 7.335 | 6.636 | 5.954 | 5.023 | 7.259 | 6.535 | 8.053 | 7.075 | (7.868, 8.225) | (6.736, 7.691) | |
| Mice-1 | 1405 | U | 6.040 | 5.341 | 4.378 | 3.579 | 5.670 | 4.940 | 5.580 | 4.863 | (5.485, 5.705) | (4.647, 5.184) |
| |${\chi}^2$| | 5.983 | 5.255 | 5.580 | 4.863 | (5.485, 5.705) | (4.647, 5.184) | ||||||
| Mice-2 | 1571 | U | 6.040 | 5.341 | 4.999 | 3.910 | 5.684 | 4.954 | 5.486 | 4.873 | (5.373, 5.828) | (4.662, 5.151) |
| |${\chi}^2$| | 5.997 | 5.269 | 5.486 | 4.873 | (5.373, 5.828) | (4.662, 5.151) | ||||||
| Mice-3 | 1642 | U | 6.041 | 5.342 | 4.962 | 4.228 | 5.675 | 4.945 | 5.509 | 4.902 | (5.375, 5.896) | (4.676, 5.189) |
| |${\chi}^2$| | 5.988 | 5.260 | 5.509 | 4.902 | (5.375, 5.896) | (4.676, 5.189) | ||||||
| Mice-4 | 1643 | U | 6.041 | 5.342 | 5.041 | 4.112 | 5.669 | 4.939 | 5.523 | 4.803 | (5.353, 5.918) | (4.622, 5.048) |
| |${\chi}^2$| | 5.982 | 5.254 | 5.523 | 4.803 | (5.353, 5.918) | (4.622, 5.048) | ||||||
| Traits . | n . | Statistic . | BD . | BH . | QA . | Permutation . | Confidence interval . | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| . | . | . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . | 0.01 . | 0.05 . |
| Ara-1 | 89 | t | 7.335 | 6.636 | 7.335 | 6.636 | 7.256 | 6.567 | 7.213 | 6.346 | (7.046, 7.392) | (6.192, 6.764) |
| Ara-2 | 93 | 7.335 | 6.636 | 7.335 | 6.636 | 7.263 | 6.536 | 7.424 | 6.544 | (7.133, 7.614) | (6.304, 6.886) | |
| Ara-3 | 93 | 7.335 | 6.636 | 7.335 | 6.636 | 7.256 | 6.529 | 6.879 | 6.347 | (6.712, 7.359) | (6.133, 6.533) | |
| Ara-4 | 100 | 7.335 | 6.636 | 7.335 | 6.636 | 7.259 | 6.475 | 7.161 | 6.437 | (6.903, 7.299) | (6.251, 6.750) | |
| Ara-5 | 110 | 7.335 | 6.636 | 7.335 | 6.636 | 7.262 | 6.536 | 7.339 | 6.670 | (7.188, 7.938) | (6.483, 6.939) | |
| Ara-6 | 164 | 7.335 | 6.636 | 6.733 | 5.681 | 7.248 | 6.523 | 7.547 | 6.605 | (7.462, 8.125) | (6.471, 7.100) | |
| Ara-7 | 166 | 7.335 | 6.636 | 7.335 | 5.045 | 7.246 | 6.522 | 7.585 | 6.894 | (7.429, 7.813) | (6.681, 7.204) | |
| Ara-8 | 180 | 7.335 | 6.636 | 5.954 | 5.023 | 7.259 | 6.535 | 8.053 | 7.075 | (7.868, 8.225) | (6.736, 7.691) | |
| Mice-1 | 1405 | U | 6.040 | 5.341 | 4.378 | 3.579 | 5.670 | 4.940 | 5.580 | 4.863 | (5.485, 5.705) | (4.647, 5.184) |
| |${\chi}^2$| | 5.983 | 5.255 | 5.580 | 4.863 | (5.485, 5.705) | (4.647, 5.184) | ||||||
| Mice-2 | 1571 | U | 6.040 | 5.341 | 4.999 | 3.910 | 5.684 | 4.954 | 5.486 | 4.873 | (5.373, 5.828) | (4.662, 5.151) |
| |${\chi}^2$| | 5.997 | 5.269 | 5.486 | 4.873 | (5.373, 5.828) | (4.662, 5.151) | ||||||
| Mice-3 | 1642 | U | 6.041 | 5.342 | 4.962 | 4.228 | 5.675 | 4.945 | 5.509 | 4.902 | (5.375, 5.896) | (4.676, 5.189) |
| |${\chi}^2$| | 5.988 | 5.260 | 5.509 | 4.902 | (5.375, 5.896) | (4.676, 5.189) | ||||||
| Mice-4 | 1643 | U | 6.041 | 5.342 | 5.041 | 4.112 | 5.669 | 4.939 | 5.523 | 4.803 | (5.353, 5.918) | (4.622, 5.048) |
| |${\chi}^2$| | 5.982 | 5.254 | 5.523 | 4.803 | (5.353, 5.918) | (4.622, 5.048) | ||||||
n is population size; BD represents Bonferroni step-down adjustment, BH controlling FDR and QA quick approximation methods. Ara-1–8 represent the trait X182_Hypocotyl.length, X278_Germ.in.dark, X29_Se82, X272_Seedling.Growth, X283_Storage.56.days, X44_FRI, X59_FT.GH, X57_FT.Field, respectively, in Arabidopsis. Mice-1–4 refer to the trait Imm.PctCD8, Haem.MCH, FPS.Pre.Bang.ToneMean, FPS.Pre.Bang.Mean, respectively, in mouse.
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