Table 2. Open in new tab Examples of...

Category

Common name

Display in CAZy structure pages

Example of PDB file

Nonreducing oligosaccharides

α-cyclodextrin

3EDF

β-cyclodextrin

3CGT

Sucrose

α-D-Glcp-(1-2)-β-D-Fruf

4FFH

Raffinose

α-D-Galp-(1-6)-α-D-Glcp-(1-2)-β-D-Fruf

1W2T

Kestose

α-D-Glcp-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf

3LDR

Nystose

α-D-Glcp-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf

3LEM

Thio-oligosaccharides

Thio-cellobiose

β-D-Glcp-(1-4)-β-D-Glcp4S

4IPM

Thio-laminaribiose

β-D-Glcp-(1-3)-β-D-Glcp3S

1J8V

Thio-xylopentaose

β-D-Xylp-(1-4)-β-D-Xylp4S-(1-4)-β-D-Xylp4S-(1-4)-β-D-Xylp4S-(1-4)- β-D-Xylp4S

3CUJ

α-methyl-thio-cellopentaoside

β-D-Glcp-(1-4)-β-D-Glcp4S-(1-4)-β-D-Glcp4S-(1-4)-β-D-Glcp4S-(1-4)- α-D-Glcp4S-(1-1)-methyl

1H5V

Fluoro-oligosaccharides

5-fluoro-β-D-glucose

β-D-Glcp5F

4AMX

2-deoxy-2-fluoro-α-D-glucose

α-D-Glcp2F

1UYQ

5-fluoro-β-D-xylose

β-D-Xylp5F

2XVK

3,6-anhydro oligosaccharides

Neoagarohexaose

α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp

2CDO

Porphyran/agarose hexasaccharide

α-L-Galp6SO3-(1-3)-α-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-Galp6SO3-(1-3)-α-D-Galp

4AW7

Agarooctaose

α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)- α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp

4ATF

Acarbose and its derivatives

Acarbose

<non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-β-D-Glcp

3ZOA

Acarbose-derived trisaccharide

<non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp

1XCW

Acarbose-derived pentasaccharide

α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-<non_carb>-(0-4)- α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-β-D-Glcp

1PIG

Table 2.

Open in new tab

Examples of carbohydrate ligands treated manually

Category	Common name	Display in CAZy structure pages	Example of PDB file
Nonreducing oligosaccharides	α-cyclodextrin	α-cyclodextrin	3EDF
	β-cyclodextrin	β-cyclodextrin	3CGT
	Sucrose	α-D-Glcp-(1-2)-β-D-Fruf	4FFH
	Raffinose	α-D-Galp-(1-6)-α-D-Glcp-(1-2)-β-D-Fruf	1W2T
	Kestose	α-D-Glcp-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf	3LDR
	Nystose	α-D-Glcp-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf	3LEM
Thio-oligosaccharides	Thio-cellobiose	β-D-Glcp-(1-4)-β-D-Glcp4S	4IPM
	Thio-laminaribiose	β-D-Glcp-(1-3)-β-D-Glcp3S	1J8V
	Thio-xylopentaose	β-D-Xylp-(1-4)-β-D-Xylp4S-(1-4)-β-D-Xylp4S-(1-4)-β-D-Xylp4S-(1-4)- β-D-Xylp4S	3CUJ
	α-methyl-thio-cellopentaoside	β-D-Glcp-(1-4)-β-D-Glcp4S-(1-4)-β-D-Glcp4S-(1-4)-β-D-Glcp4S-(1-4)- α-D-Glcp4S-(1-1)-methyl	1H5V
Fluoro-oligosaccharides	5-fluoro-β-D-glucose	β-D-Glcp5F	4AMX
	2-deoxy-2-fluoro-α-D-glucose	α-D-Glcp2F	1UYQ
	5-fluoro-β-D-xylose	β-D-Xylp5F	2XVK
3,6-anhydro oligosaccharides	Neoagarohexaose	α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp	2CDO
	Porphyran/agarose hexasaccharide	α-L-Galp6SO3-(1-3)-α-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-Galp6SO3-(1-3)-α-D-Galp	4AW7
	Agarooctaose	α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)- α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp	4ATF
Acarbose and its derivatives	Acarbose	<non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-β-D-Glcp	3ZOA
	Acarbose-derived trisaccharide	<non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp	1XCW
	Acarbose-derived pentasaccharide	α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-<non_carb>-(0-4)- α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-β-D-Glcp	1PIG

Category	Common name	Display in CAZy structure pages	Example of PDB file
Nonreducing oligosaccharides	α-cyclodextrin	α-cyclodextrin	3EDF
	β-cyclodextrin	β-cyclodextrin	3CGT
	Sucrose	α-D-Glcp-(1-2)-β-D-Fruf	4FFH
	Raffinose	α-D-Galp-(1-6)-α-D-Glcp-(1-2)-β-D-Fruf	1W2T
	Kestose	α-D-Glcp-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf	3LDR
	Nystose	α-D-Glcp-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf	3LEM
Thio-oligosaccharides	Thio-cellobiose	β-D-Glcp-(1-4)-β-D-Glcp4S	4IPM
	Thio-laminaribiose	β-D-Glcp-(1-3)-β-D-Glcp3S	1J8V
	Thio-xylopentaose	β-D-Xylp-(1-4)-β-D-Xylp4S-(1-4)-β-D-Xylp4S-(1-4)-β-D-Xylp4S-(1-4)- β-D-Xylp4S	3CUJ
	α-methyl-thio-cellopentaoside	β-D-Glcp-(1-4)-β-D-Glcp4S-(1-4)-β-D-Glcp4S-(1-4)-β-D-Glcp4S-(1-4)- α-D-Glcp4S-(1-1)-methyl	1H5V
Fluoro-oligosaccharides	5-fluoro-β-D-glucose	β-D-Glcp5F	4AMX
	2-deoxy-2-fluoro-α-D-glucose	α-D-Glcp2F	1UYQ
	5-fluoro-β-D-xylose	β-D-Xylp5F	2XVK
3,6-anhydro oligosaccharides	Neoagarohexaose	α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp	2CDO
	Porphyran/agarose hexasaccharide	α-L-Galp6SO3-(1-3)-α-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-Galp6SO3-(1-3)-α-D-Galp	4AW7
	Agarooctaose	α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)- α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp	4ATF
Acarbose and its derivatives	Acarbose	<non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-β-D-Glcp	3ZOA
	Acarbose-derived trisaccharide	<non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp	1XCW
	Acarbose-derived pentasaccharide	α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-<non_carb>-(0-4)- α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-β-D-Glcp	1PIG

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