Table 1 Open in new tab Top Variants...

Table 1

Top Variants Selected by PBS_n₁

Chr	SNP ID	f_ATA	$f_{ATA}^{*}$	f_MA	f_EAS	PBS_n₁	B	Gene	Conseq.	(KB)
3	rs2276440	0.454	0.910	0.012	0.076	0.4551	0.949	AP002806.1	DS	9.8
1	rs11205084	0.413	0.903	0.051	0.123	0.4096	0.778	LCE4A	US	7.6
9	rs1329776	0.5	0.896	0.051	0.123	0.4035	0.891	TRPM3	IN	0
5	rs17586072	0.429	0.958	0.205	0.128	0.3952	0.888	RP11-114J13.1	IN-NC	0
1	rs3002116	0.527	0.819	0.013	0.057	0.3873	0.594	XPR1	IN	0
12	rs17419697	0.5	0.238	0.988	0.998	0.3768	0.797	VWF	IN	0
17	rs3095168	0.546	0.087	0.795	0.921	0.3707	0.666	CENPV	US	3.3
11	rs17112293	0.391	0.857	0.205	0.117	0.3545	0.850	ARHGAP20	IG	414
7	rs10234832	0.470	0.905	0.294	0.005	0.3464	0.733	AC005154.6	NC	0
1	rs10924824	0.664	0.978	0.308	0.252	0.3342	0.858	SCCPDH	DS	0.3

Chr	SNP ID	f_ATA	$f_{ATA}^{*}$	f_MA	f_EAS	PBS_n₁	B	Gene	Conseq.	(KB)
3	rs2276440	0.454	0.910	0.012	0.076	0.4551	0.949	AP002806.1	DS	9.8
1	rs11205084	0.413	0.903	0.051	0.123	0.4096	0.778	LCE4A	US	7.6
9	rs1329776	0.5	0.896	0.051	0.123	0.4035	0.891	TRPM3	IN	0
5	rs17586072	0.429	0.958	0.205	0.128	0.3952	0.888	RP11-114J13.1	IN-NC	0
1	rs3002116	0.527	0.819	0.013	0.057	0.3873	0.594	XPR1	IN	0
12	rs17419697	0.5	0.238	0.988	0.998	0.3768	0.797	VWF	IN	0
17	rs3095168	0.546	0.087	0.795	0.921	0.3707	0.666	CENPV	US	3.3
11	rs17112293	0.391	0.857	0.205	0.117	0.3545	0.850	ARHGAP20	IG	414
7	rs10234832	0.470	0.905	0.294	0.005	0.3464	0.733	AC005154.6	NC	0
1	rs10924824	0.664	0.978	0.308	0.252	0.3342	0.858	SCCPDH	DS	0.3

Note.—Chr, chromosome; f_ATA and $f_{ATA}^{*}$ ⁠, derived allele frequency in the admixed and pseudounadmixed populations from Atacama, respectively. f_MA and f_EAS, derived allele frequency in Mesoamericans and East Asians, respectively; PBS_n₁, score; B, background selection coefficient; Conseq., SO consequence type. Abbreviations: DS, downstream; US, upstream; IN, intron; IN-NC, intron/noncoding transcript; IG, intergenic; NC, noncoding transcript. KB: kb from transcript.

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