Table 4 Open in new tab Sensitivity,... | Oxford Academic

Table 4

Open in new tab

Sensitivity, specificity and F-score of DEGs identified by CellComp, RankComp, SAM, limma and RP for simulated data

FDR (%)	Evaluation	HepG2					SNU638
FDR (%)	Evaluation	CellComp	RankComp	SAM	limma	RP	CellComp	RankComp	SAM	limma	RP
1	Sensitivity	0.709	0.628	0	0.025	0	0.956	0.736	0.475	0.648	0
	Specificity	1	1	1	1	1	0.999	0.999	1	1	1
	F-score	0.829	0.772	0	0.049	0	0.977	0.848	0.644	0.786	0
5	Sensitivity	0.726	0.644	0.041	0.197	0.015	0.965	0.744	0.635	0.878	0.288
	Specificity	1	1	1	1	1	0.999	0.999	1	1	1
	F-score	0.842	0.784	0.079	0.328	0.029	0.982	0.853	0.777	0.935	0.447
10	Sensitivity	0.798	0.755	0.345	0.393	0.058	0.970	0.755	0.802	0.936	0.506
	Specificity	1	1	0.994	1	1	0.999	0.999	1	1	1
	F-score	0.888	0.860	0.508	0.564	0.109	0.984	0.860	0.890	0.967	0.672

FDR (%)	Evaluation	HepG2					SNU638
FDR (%)	Evaluation	CellComp	RankComp	SAM	limma	RP	CellComp	RankComp	SAM	limma	RP
1	Sensitivity	0.709	0.628	0	0.025	0	0.956	0.736	0.475	0.648	0
	Specificity	1	1	1	1	1	0.999	0.999	1	1	1
	F-score	0.829	0.772	0	0.049	0	0.977	0.848	0.644	0.786	0
5	Sensitivity	0.726	0.644	0.041	0.197	0.015	0.965	0.744	0.635	0.878	0.288
	Specificity	1	1	1	1	1	0.999	0.999	1	1	1
	F-score	0.842	0.784	0.079	0.328	0.029	0.982	0.853	0.777	0.935	0.447
10	Sensitivity	0.798	0.755	0.345	0.393	0.058	0.970	0.755	0.802	0.936	0.506
	Specificity	1	1	0.994	1	1	0.999	0.999	1	1	1
	F-score	0.888	0.860	0.508	0.564	0.109	0.984	0.860	0.890	0.967	0.672

Table 4

Open in new tab

Sensitivity, specificity and F-score of DEGs identified by CellComp, RankComp, SAM, limma and RP for simulated data

FDR (%)	Evaluation	HepG2					SNU638
FDR (%)	Evaluation	CellComp	RankComp	SAM	limma	RP	CellComp	RankComp	SAM	limma	RP
1	Sensitivity	0.709	0.628	0	0.025	0	0.956	0.736	0.475	0.648	0
	Specificity	1	1	1	1	1	0.999	0.999	1	1	1
	F-score	0.829	0.772	0	0.049	0	0.977	0.848	0.644	0.786	0
5	Sensitivity	0.726	0.644	0.041	0.197	0.015	0.965	0.744	0.635	0.878	0.288
	Specificity	1	1	1	1	1	0.999	0.999	1	1	1
	F-score	0.842	0.784	0.079	0.328	0.029	0.982	0.853	0.777	0.935	0.447
10	Sensitivity	0.798	0.755	0.345	0.393	0.058	0.970	0.755	0.802	0.936	0.506
	Specificity	1	1	0.994	1	1	0.999	0.999	1	1	1
	F-score	0.888	0.860	0.508	0.564	0.109	0.984	0.860	0.890	0.967	0.672

FDR (%)	Evaluation	HepG2					SNU638
FDR (%)	Evaluation	CellComp	RankComp	SAM	limma	RP	CellComp	RankComp	SAM	limma	RP
1	Sensitivity	0.709	0.628	0	0.025	0	0.956	0.736	0.475	0.648	0
	Specificity	1	1	1	1	1	0.999	0.999	1	1	1
	F-score	0.829	0.772	0	0.049	0	0.977	0.848	0.644	0.786	0
5	Sensitivity	0.726	0.644	0.041	0.197	0.015	0.965	0.744	0.635	0.878	0.288
	Specificity	1	1	1	1	1	0.999	0.999	1	1	1
	F-score	0.842	0.784	0.079	0.328	0.029	0.982	0.853	0.777	0.935	0.447
10	Sensitivity	0.798	0.755	0.345	0.393	0.058	0.970	0.755	0.802	0.936	0.506
	Specificity	1	1	0.994	1	1	0.999	0.999	1	1	1
	F-score	0.888	0.860	0.508	0.564	0.109	0.984	0.860	0.890	0.967	0.672