Information on chromosome numbers (2n) and rDNA characterization in the three gnetophyte species analysed
Species . | No. of chromosomes (2n) . | No. of 18S/5S rDNA sites at metaphasea . | Estimated length of 35S/5S rDNA contigs (bp) . | Estimated GP (%)/CN of 18S rDNAb . | Estimated GP (%)/CN of 5S rDNAb . | ||
---|---|---|---|---|---|---|---|
Calculated from HTPc . | Slot-blot hybridizationd . | Calculated from HTPc . | Slot-blot hybridizationd . | ||||
Ephedra altissima | 28e | 14–16 | 6766 | 0.058/6000 | 0.060/6200 | 0.010/15000 | 0.005/7700 |
Gnetum montanum | 44f | ~6–8/>10 | 6527/627 | 0.132/3100 | 0.142/4000 | 0.301/105200 | 0.250/87400 |
Welwitschia mirabilis | 42g | 2/2 | 5981/958 | 0.063/2500 | n.d.h | 0.007/3800 | n.d.h |
Species . | No. of chromosomes (2n) . | No. of 18S/5S rDNA sites at metaphasea . | Estimated length of 35S/5S rDNA contigs (bp) . | Estimated GP (%)/CN of 18S rDNAb . | Estimated GP (%)/CN of 5S rDNAb . | ||
---|---|---|---|---|---|---|---|
Calculated from HTPc . | Slot-blot hybridizationd . | Calculated from HTPc . | Slot-blot hybridizationd . | ||||
Ephedra altissima | 28e | 14–16 | 6766 | 0.058/6000 | 0.060/6200 | 0.010/15000 | 0.005/7700 |
Gnetum montanum | 44f | ~6–8/>10 | 6527/627 | 0.132/3100 | 0.142/4000 | 0.301/105200 | 0.250/87400 |
Welwitschia mirabilis | 42g | 2/2 | 5981/958 | 0.063/2500 | n.d.h | 0.007/3800 | n.d.h |
aSite numbers are based on FISH (Fig. 5).
bGP and CN, genome proportion and copy number of rDNA per 1C.
cGP estimated by (the number of mapped reads) / (total number of reads analysed), CN was estimated by (GP×genome size) / (estimated rDNA sequence length) (Supplementary Data Table S1), the reference sequences were 120 bp of 5S and c.1800 bp of 18S rRNA genes from the assembled RE contigs.
dGP and CN were estimated experimentally from slot-blot hybridization signals (Supplementary Data Fig. S10).
eResende (1936) and this study.
fWan et al. (2018) and this study.
gFlorin (1932) and this study.
hn.d. not determined.
Information on chromosome numbers (2n) and rDNA characterization in the three gnetophyte species analysed
Species . | No. of chromosomes (2n) . | No. of 18S/5S rDNA sites at metaphasea . | Estimated length of 35S/5S rDNA contigs (bp) . | Estimated GP (%)/CN of 18S rDNAb . | Estimated GP (%)/CN of 5S rDNAb . | ||
---|---|---|---|---|---|---|---|
Calculated from HTPc . | Slot-blot hybridizationd . | Calculated from HTPc . | Slot-blot hybridizationd . | ||||
Ephedra altissima | 28e | 14–16 | 6766 | 0.058/6000 | 0.060/6200 | 0.010/15000 | 0.005/7700 |
Gnetum montanum | 44f | ~6–8/>10 | 6527/627 | 0.132/3100 | 0.142/4000 | 0.301/105200 | 0.250/87400 |
Welwitschia mirabilis | 42g | 2/2 | 5981/958 | 0.063/2500 | n.d.h | 0.007/3800 | n.d.h |
Species . | No. of chromosomes (2n) . | No. of 18S/5S rDNA sites at metaphasea . | Estimated length of 35S/5S rDNA contigs (bp) . | Estimated GP (%)/CN of 18S rDNAb . | Estimated GP (%)/CN of 5S rDNAb . | ||
---|---|---|---|---|---|---|---|
Calculated from HTPc . | Slot-blot hybridizationd . | Calculated from HTPc . | Slot-blot hybridizationd . | ||||
Ephedra altissima | 28e | 14–16 | 6766 | 0.058/6000 | 0.060/6200 | 0.010/15000 | 0.005/7700 |
Gnetum montanum | 44f | ~6–8/>10 | 6527/627 | 0.132/3100 | 0.142/4000 | 0.301/105200 | 0.250/87400 |
Welwitschia mirabilis | 42g | 2/2 | 5981/958 | 0.063/2500 | n.d.h | 0.007/3800 | n.d.h |
aSite numbers are based on FISH (Fig. 5).
bGP and CN, genome proportion and copy number of rDNA per 1C.
cGP estimated by (the number of mapped reads) / (total number of reads analysed), CN was estimated by (GP×genome size) / (estimated rDNA sequence length) (Supplementary Data Table S1), the reference sequences were 120 bp of 5S and c.1800 bp of 18S rRNA genes from the assembled RE contigs.
dGP and CN were estimated experimentally from slot-blot hybridization signals (Supplementary Data Fig. S10).
eResende (1936) and this study.
fWan et al. (2018) and this study.
gFlorin (1932) and this study.
hn.d. not determined.
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